我借助python中的CAI模块实现 github.com/Benjamin-Lee 使用pip直接安装 pip install CAI 计算RSCU值 from CAI import RSCU from Bio import SeqIO seqs = [rec.seq for rec in SeqIO.parse('codon_usage_example.fasta','fasta')] rscu = R
研究密码子偏向性的论文通常都会分析RSCU值,论文中通常会用堆积柱形图来展示RSCU的值,之前在论文里也看到过下面这幅图的形式展示RSCU分析的结果
首先是计算RSCU值 我借助python中的CAI模块实现 使用pip直接安装 pip install CAI 1. 计算RSCU值 from CAI import RSCU from Bio import SeqIO seqs = [rec.seq for rec in SeqIO.parse('codon_usage_example.fasta','fasta')] rscu = RSCU(seqs) 1. 2. 3. 4. r...
In astacked barplot, subgroups are displayed on top of each other. The code is very similar with the previous post#11-grouped barplot. Instead of passing different x axis positions to the function, you will pass the same positions for each variable. Additionally, in order to draw bars on t...
我借助python中的CAI模块实现 https://github.com/Benjamin-Lee/CodonAdaptationIndex 使用pip直接安装 pip install CAI 计算RSCU值 fromCAIimportRSCUfromBioimportSeqIO seqs=[rec.seqforrecinSeqIO.parse('codon_usage_example.fasta','fasta')]rscu=RSCU(seqs) ...
ggplot 是一个用于在R语言中生成图形的库。我们提供数据,并指定美学上的指定数据应如何映射。它是一个非常强大的库,广泛用于生成全面的图形和图表。它被用于创建基于 “图形语法 “的图形。柱状图或条形图是一种数据可视化工具,广泛用于表示数字和分类变量之间的关系。数字变量通常绘制在Y轴上,分类变量绘制在水平X轴...
Python 中的 seaborn 模块使用 seaborn.barplot() 函数创建条形图。 请参考下面的代码,为商品在不同日期的价格创建一个简单的条形图。 ADVERTISEMENT import pandas as pd import matplotlib.pyplot as plt import seaborn as sns df = pd.DataFrame( {"Price 1": [7, 1, 5, 6, 3, 10, 5, 8], "Day...
我借助python中的CAI模块实现 https://github.com/Benjamin-Lee/CodonAdaptationIndex 使用pip直接安装 pip install CAI 计算RSCU值 from CAI import RSCU from Bio import SeqIO seqs = [rec.seq for rec in SeqIO.parse('codon_usage_example.fasta','fasta')] ...
As the groups and subgroups can be displayed in a grouped bar plot with a side by side bars, they can also be displayed in stacked bars. This post provides a reproducible code to plot a stacked barplot using matplotlib. Barplot sectionAbout this chartIn a stacked barplot, subgroups are ...