illumina-dump: 将sra转换为illumina原始的qseq文件; sra-stat: 统计sra文件 vdb-config,vdb-decrypt,vdb-dump,vdb-encrypt,vdb-validate处理vdb格式数据。 这里我们要下载PRJNA553240的数据。 如果想知道数据的具体信息,比如数据是什么样品,采用哪种平台测序的,测序长度是多少,测序深度是多少,都可以到SRA网站上去查。
20 sra-stat.2.8.1 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -78 ( NET - Sending information through the socket failed ) 2017-07-15T21:36:20 sra-stat.2.8.1 int: directory not found while opening manager within virtual file system ...
Note: only for files submitted as aligned data), with aquality offset of 64 (-Q 64) Please see the documentation on vdb-dump ifyou wish to produce fasta/qual data.Possible errors and their solution:fastq-dump.2.x err: item not found while constructingwithin virtual database mo...
Fixed a bug resulting in 'reference not found' messages for reference sequences stored inside a run. July 10, 2023:SRA Toolkit 3.0.6 Prefetch now supports the latest GCP access tokens. Fixed a bug in vdb-config for Windows users.
Conditions: This symptom is observed on a Cisco router that has a UDL interface that is connected to a satellite link after you have upgraded the Cisco IOS software image from Release 12.4(5a) to Release 12.4(7a). However, the symptom is not release-specific. ...
print not found说明没找到 print Error 说明遇到了其他问题 zhn写了个小脚本prefetch_download_from_efetch.py 下载地址 image.png image.png 可以配合screen命令扔后台跑着,这要手动下载不得累死。。 5.注意事项 i. 默认下载的是sra格式数据,可以使用fastq-dump将sra转换为fastq了。
regstat.c reload.c reload.h reload1.c reorg.c resource.c resource.h rtl-error.c rtl-error.h rtl-iter.h rtl-tests.c rtl.c rtl.def rtl.h rtlanal.c rtlhash.c rtlhash.h rtlhooks-def.h rtlhooks.c rtx-vector-builder.c rtx-vector-builder.h run-rtl-passes.c run-rtl-passes.h s...
Fixed a bug resulting in 'reference not found' messages for reference sequences stored inside a run. July 10, 2023:SRA Toolkit 3.0.6 Prefetch now supports the latest GCP access tokens. Fixed a bug in vdb-config for Windows users.
Fixed a bug resulting in 'reference not found' messages for reference sequences stored inside a run. July 10, 2023:SRA Toolkit 3.0.6 Prefetch now supports the latest GCP access tokens. Fixed a bug in vdb-config for Windows users.