摘要参考翻译:SQANTI3是一款专为第三代测序技术获得的长读长转录本模型的质量控制、整理和注释而设计的工具。利用其注释框架,SQANTI3可计算转录本模型、junctions、转录本末端的质量描述符。有了这些信息,就能识别potential artifacts,并用可靠的序列进行替换。此外,集成的功能注释功能还能进行后续的functional iso-transcrip...
一、SQANTI3 v5.2 安装 SQANTI3的下载 代码语言:bash AI代码解释 $wgethttps://github.com/ConesaLab/SQANTI3/archive/refs/tags/v5.2.tar.gz $tar-xvfv5.2.tar.gz SQANTI3的conda环境创建 代码语言:bash AI代码解释 $cdSQANTI3 $ condaenvcreate-fSQANTI3.conda_env.yml $sourceactivate SQANTI3.env ...
adding example results of SQANTI-reads Dec 15, 2024 utilities ordering X axis categories and stack categories Nov 26, 2024 .gitignore Fix fatal error in SQANTI3_report.R#278 Mar 27, 2024 CODE_OF_CONDUCT.md Create CODE_OF_CONDUCT.md ...
一、SQANTI3 v5.2 安装 SQANTI3的下载: $ wget https://github.com/ConesaLab/SQANTI3/archive/refs/tags/v5.2.tar.gz $ tar-xvf v5.2.tar.gz SQANTI3的conda环境创建: $ cdSQANTI3$ conda env create-fSQANTI3.conda_env.yml $ source activateSQANTI3.env ...
Tool for the Quality Control of Long-Read Defined Transcriptomes - SQANTI3/test_isoforms_classification.tsv at master · ConesaLab/SQANTI3
SQANTI3 is the newest version of the SQANTI tool (publication) that merges features from SQANTI, (code repository) and SQANTI2 (code repository), together with new additions. SQANTI3 will continue as an integrated development aiming to providing you the best characterization possible for your new...
SQANTI 5.3.0 This release include some new minor features, such as the inclusion of a Dockerfile of sqanti and a wrapper to execute all SQANTI steps at once. Also enhances compatibility for fastq.gz files in sqanti3_qc.py and a new sqanti tool, sqanti_reads.py!
Through there release, the main issues fixed are related to the issues381and379. As new features, SQANTI3 directly takes one bam file as SR_bam input, and the input format for the isoforms ID has been expanded to accept non-IsoSeq nomenclature. ...
SQANTI3 is the first module of theFunctional IsoTranscriptomics (FIT)framework, which also includes IsoAnnot and tappAS. Installation Thelatest SQANTI3 release(31/07/2024) isversion 5.2.2. See our wiki forinstallation instructions. For informacion about previous releases and features introduced in ...