carolinamonzo Merge pull request#365from ConesaLab/SQANTI-reads-devel Dec 15, 2024 267c5dd·Dec 15, 2024 History 599 Commits .github/ISSUE_TEMPLATE Update config.yml Mar 7, 2024 data PolyA peak bug fixed Jan 11, 2022 example adding example results of SQANTI-reads ...
This release include some new minor features, such as the inclusion of a Dockerfile of sqanti and a wrapper to execute all SQANTI steps at once. Also enhances compatibility for fastq.gz files in sqanti3_qc.py and a new sqanti tool, sqanti_reads.py! Several bugfixes are corrected: Sqanti ...
#首先激活SQANTI3$sourceactivate SQANTI3.env#然后下载cDNA_Cupcake(SQANTI3.env)$gitclone https://github.com/Magdoll/cDNA_Cupcake.git(SQANTI3.env)$cdcDNA_Cupcake#安装cDNA_Cupcake(SQANTI3.env)$ python setup.py build(SQANTI3.env)$ python setup.pyinstall ...
安装cDNA_Cupcake软件 #首先激活SQANTI3$ source activateSQANTI3.env#然后下载cDNA_Cupcake(SQANTI3.env)$ git clone https://github.com/Magdoll/cDNA_Cupcake.git(SQANTI3.env)$ cd cDNA_Cupcake#安装cDNA_Cupcake(SQANTI3.env)$ python setup.py build(SQANTI3.env)$ python setup.py install 二、运行SQANT...
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Fixed subclassification bug for NNC by@pabloatiin#385 changed the input gtf to output introns to the corrected cds gff by@CarlosBlancoGoin#370 Sqanti reads devel merge compatibility fix from Carlos by@carolinamonzoin#386 New Contributors
git clone https://github.com/ConesaLab/SQANTI3.git (2) Move into the SQANTI3 folder and create a virutal environment with all the Python packages required for installation by running theSQANTI3.conda_env.ymlscript that you can find in the main folder. This script contains all the information...
Name Last commit message Last commit date Latest commit History 568 Commits .github/ISSUE_TEMPLATE data example utilities .gitignore CODE_OF_CONDUCT.md CONTRIBUTING.md Dockerfile LICENSE LICENSE.md Makefile README.md SQANTI3.conda_env.yml