In addition, SpliceFinder performs well on the genomic sequences of Drosophila melanogaster, Mus musculus, Rattus, and Danio rerio without retraining. Conclusion: Based on CNN, we have proposed a new ab initio splice site prediction tool, SpliceFinder, which generates less false positives and can...
In addition, SpliceFinder performs well on the genomic sequences of Drosophila melanogaster, Mus musculus, Rattus, and Danio rerio without retraining. Conclusion Based on CNN, we have proposed a new ab initio splice site prediction tool, SpliceFinder, which generates less false positives and can ...
并且4 个计算机预测软件程序(SpliceSiteFinder,MaxEntScan,NNSPLICE,GeneSplicer)中只有1个预测剪接差异大于10%;(3)变异携带者的PALB2 mRNA与PALB2蛋白的表达和... 朱光强 - 川北医学院 被引量: 0发表: 2022年 部分遗传性出血性疾病的分子发病机制研究及凝血酶生成试验的应用 通过剪切位点分析软件NNS plic e(ww...
In short, the predicted effect of noncoding variants on splicing was evaluated using the algorithms SpliceSiteFinder‐like, MaxEntScan, GeneSplicer, and Human Splicing Finder embedded in the Alamut Visual software version 2.10 (Interactive Biosoftware, Rouen, France; http://www.interactive-biosoftware....
The selection of splice prediction tools included CADD, DSSP, GeneSplicer, MaxEntScan, MMSplice, MTSplice, NNSPLICE, SPIDEX, SpliceAI, SpliceRover and SpliceSiteFinder﹍ike. The best performing splice prediction tool for the different variants was SpliceRover for ABCA4 NCSS variants, SpliceAI for ...
years, convolutional neural networks (CNNs), which have been highly successful in a variety of areas [19,20,21,22] have been explored as a possible approach to splice site recognition. Several new splice site predictors, including SpliceAI [23], SpliceFinder [24], Spliceator [25], Splice...
Wang R, Wang Z, Wang J, Li S, Splicefinder: ab initio prediction of splice sites using convolutional neural network, BMC bioinformatics 20(23):652, 2019. Wei D, Zhang H, Wei Y, Jiang Q, A novel splice site prediction method using support vector machine, Journal of Computational Informati...
site prediction of acceptor and donor sites is considered, whereas the higher goal is to use the splice site predictor within a gene finder. It is uncertain how good the predictors perform in this setting. Keeping these in mind, we provide unbiasedgenome-widesplice site prediction which enables...
Variants effect on the nearest splice site was predicted using NNSplice (Berkeley, CA, USA),12 MutPred Splice (v1.3.2),13 SKIPPY14 and Human Splice Finder (v2.4.1).15 Sanger sequencing validation The homozygous sequence variant, identified here, was verified by bidirectional Sanger sequencing ...
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