用法: single_source_shortest_path(G, source, cutoff=None)计算源和从源可到达的所有其他节点之间的最短路径。参数: G:NetworkX 图 source:节点标签 路径的起始节点 cutoff:整数,可选 停止搜索的深度。仅返回长度 <= 截止的路径。 返回: lengths:字典 字典,由目标键入,最短路径。注意...
PINNACLEgenerates protein representations for each of the 156 cell type contexts spanning 62 tissues of varying hierarchical scales. In total,PINNACLE’s unified multiscale embedding space comprises 394,760 protein representations, 156 cell type representations and 62 tissue representations (Fig.1a). We ...
5). CytoSPACE was highly efficient, processing a Visium-scale dataset in approximately 5 minutes, on average, with a single CPU core (Supplementary Table 4). This was true regardless of whether we applied shortest augmenting path or integer programming approximation approaches, both of which ...
Branches of pseudotime trajectories were selected by assigning earliest principal node with highest number of t0 cells as a start and end principal node of differentiated JZP or LP cluster as end and connecting the shortest path between the points. Branches were then plotted on UMAP with cells co...
Then run any of the following commands in the PicoRV32 source directory: CommandInstall DirectoryISA make -j$(nproc) build-riscv32i-tools /opt/riscv32i/ RV32I make -j$(nproc) build-riscv32ic-tools /opt/riscv32ic/ RV32IC make -j$(nproc) build-riscv32im-tools /opt/riscv32im/...
an open-source, cross-platform visualization, reconstruction and analysis system27,28. In parallel, each fMOST dataset was registered to the 3D Allen mouse brain Common Coordinate Framework (CCFv3)29, using a newly developed mBrainAligner program specifically designed for fMOST datasets to handle the...
A custom-built inverted Nikon Ti microscope described above was automated based on a prototype47 using code written in Python and the NIS Elements Macro Language. The microscope stage was moved to raster over a grid on the surface of the imaging dish. At each point on the grid, a 512 px...
SZ UV cones had the longest outer segments (9.0 ± 0.4 μm), while the immediately neighboring ventral UV cones had the shortest (0.6 ± 0.8 μm). A secondary peak occurred in nasal UV cones (7.0 ± 0.5 μm), which survey the outward horizon, possibly to also support the UV-driven ...
Source data are provided as a Source Data file. Full size image Properties of Cellcano anchors Cellcano selects anchor cells from the target dataset based on the prediction entropy from the first round (details in the Methods section) and uses them as reference to predict cell types for non...
(contribution to a single trajectory)21,22,23. Palantir21, which is based on an iteratively refined shortest path in the space of diffusion components, is used for pseudotime ordering by default, where Palantir is provided with CellRank’s computed initial state. By correlating gene expression ...