1、随便点击一个样本编号,比如说GSM92240,看下Series Matrix File都经过了什么预处理: 2、顺便提一下MAS5和RMA都是把检测到的每个样本的探针信号,转换成具体的数值,没有经过标准化处理,更没有经过log转换,是很原始的值,需要进一步处理才能进行分析。如果你不喜欢原作者对数据的处理方式,你也可以下载原始的文件,自...
GEO里的SOFT formatted family file(s) 、MINiML formatted family file(s) 、Series Matrix File(s)是什么文件 知乎用户S5nPmT 寒夜客来茶当酒3 人赞同了该文章 下载下来,用7zip软件打开就可以看到了。 都是些样本信息,诸如编号、测序平台、方法等等。 截图如下 重要的是下面这个文件 这个一般就是fastq处理过...
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1)使用jmatio将mat数据转化为SequenceFile形式的数据,代码如下: 1 /** 2 * Created with IntelliJ IDEA. 3 * User: hadoop 4 * Date: 16-3-6 5 * Time: 上午10:56 6 * To change this template use File | Settings | File Templates. 7 */ 8 import com.jmatio.io.MatFileReader; 9 import co...
Matrix Profile I: All Pairs Similarity Joins for Time Series: A Unifying View That Includes Motifs, Discords and Shapelets 来自 学术范 喜欢 0 阅读量: 867 作者:CCM Yeh,Z Yan,L Ulanova,N Begum,E Keogh 摘要: The all-pairs-similarity-search (or similarity join) problem has been extensively...
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Yeh, Chin-Chia Michael, et al. (2016) Matrix Profile I: All Pairs Similarity Joins for Time Series: A Unifying View that Includes Motifs, Discords, and Shapelets. ICDM:1317-1322.Link Zhu, Yan, et al. (2016) Matrix Profile II: Exploiting a Novel Algorithm and GPUs to Break the One ...