The study of microbiomes has been facilitated by recent technological and analytical advances, such as cheaper and higher-throughput DNA and RNA sequencing, improved long-read sequencing and innovative computat
C. et al. Interconnected microbiomes and resistomes in low-income human habitats. Nature 533, 212–216 (2016). Article CAS PubMed PubMed Central Google Scholar Gibson, M. K., Forsberg, K. J. & Dantas, G. Improved annotation of antibiotic resistance determinants reveals microbial resistome...
Through further analysis, we found that the abundance of Pantoea in saline-alkali tolerant rice seeds was positively proportional to the level of salt concentration. Overall, this study showed that the core microbiota of saline-alkali tolerant rice seeds is Pantoea, and the change of salt ...
Concurrently with the increasing interest in the field, many of the tools described above have been employed to analyze and characterize the human microbiome. Two widely used tools, HUMANn2 and QIIME2, provide extensive frameworks for gene annotation and taxonomic analysis, respectively. However, ...
even of an isogenic population, can keep evolving and differ significantly to increase the adaptivity to environmental changes4. To reveal the microbial states with different gene expression patterns, which is critical for microbial resistance, persistence, microbe–host interaction, and microbiome research...
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analysis Funding acquisition Investigation Methodology Validation Writing – review and editing) 3, Sheng-Yuan Ruan (Conceptualization Funding acquisition Investigation Project administration Resources Supervision Writing – review and editing) 2, Tai-Fen Lee (Conceptualization Data curation Formal analysis ...
In recent years, high-throughput sequencing technologies enabling comprehensive sequencing analysis of cellular RNA and DNA within the reach of most laboratories have been added to the toolbox of microbial ecology. The next-generation sequencing technology allowing processing DNA sequences can produce ...
MU Rang. Analysis of the microbial community structure and the correlation with flavor substances during qingshuang type Chinese rice wine brewing[D]. Wuxi: Jiangnan University, 2015. [27] MITTER E K, FREITAS J R, GERMIDA J J. Bacterial root microbiome of plants growing in oil sands reclam...
A. et al. Advancing our understanding of the human microbiome using QIIME. Methods Enzymol. 531, 371–444 (2013). Callahan, B. J., McMurdie, P. J. & Holmes, S. P. Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. ISME J. 11, 2639–2643...