Advances in DNA sequencing technologies and data analysis have provided drastic improvements in microbiome analyses, for example, in taxonomic resolution, false discovery rate control and other properties, over earlier methods. In this Review, we discuss the best practices for performing a microbiome ...
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The effect of different methods on microbial structures of artificial communities. A: Bray-Curtis PCoA analysis; B: Bray-Curtis distances between each group and the standard; variations of community structures between different groups calculated with PERMANOVA (9999 permutations); One-way ANOVA test wa...
MicrobiomeAnalyst is an easy-to-use, web-based platform for comprehensive analysis of common data outputs generated from current microbiome studies. It enables researchers and clinicians with little or no bioinformatics training to explore a wide variety of well-established methods for microbiome data pr...
(e.g., microbiome analysis or metabolomics analysis independently) in human health and disease. On the other hand, multi-omics approaches provide an opportunity to examine multiple layers of molecules (e.g., microbiome and metabolites) [27] to interpret health outcomes. Thus, there is paucity ...
We also use optional cookies for advertising, personalisation of content, usage analysis, and social media. By accepting optional cookies, you consent to the processing of your personal data - including transfers to third parties. Some third parties are outside of the European Economic Area, with...
b Co-occurrence network analysis of gut microbiota at the genus level. Different nodes represent different genera, the size of the node represents the average relative abundance of the genus, the nodes of the same phylum have the same color, and the thickness of the line between nodes is ...
Fecal microbiota transplantation for Clostridium difficile infection: systematic review and meta-analysis. Am. J. Gastroenterol. 108, 500–508 (2013). Article PubMed Google Scholar van Nood, E. et al. Duodenal infusion of donor feces for recurrent Clostridium difficile. N. Engl. J. Med. 368...
Comparative analysis of the microbiota between sheep rumen and rabbit cecum provides new insight into their differential methane production. Front. Microbiol. 9, 575 (2018). Article PubMed PubMed Central Google Scholar Kittelmann, S. et al. Two different bacterial community types are linked with...