Here, we report the cloning of the Pst resistance gene YrNAM in this region using the method of sequencing trait-associated mutations (STAM). YrNAM encodes a non-canonical resistance protein with a NAM domain and a ZnF-BED domain. We show that both domains are required for resistance. ...
Here, we report the cloning of the Pst resistance gene YrNAM in this region using the method of sequencing trait-associated mutations (STAM). YrNAM encodes a non-canonical resistance protein with a NAM domain and a ZnF-BED domain. We show that both domains are required for resistance. ...
Low-coverage sequencing: implications for design of complex trait association studies. Genome Res. 2011;21:940–51. Article CAS PubMed PubMed Central Google Scholar Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sanchez E, Albrechtsen A, Nielsen R. Quantifying population genetic ...
In a diploid organism, a SNP coinciding with the gene underlying the trait of interest should be revealed by informative base frequencies tending to either 1.0 or to 0.0 in the two bulks, depending on the parental origin. However, in polyploid species this upper limit of 1.0 is lower. For ...
Huan T, Rong J, Liu C, Zhang X, Tanriverdi K, Joehanes R, Chen BH, Murabito JM, Yao C, Courchesne P, Munson PJ, O’Donnell CJ, Cox N, Johnson AD, Larson MG, Levy D, Freedman JE (2015) Genome-wide identification of microRNA expression quantitative trait loci. Nat Commun 6:6601...
BSA can be used for extreme mapping, where plants from extreme ends of the phenotype range in a population derived from a single cross are bulked, or pooled, and the genotype differences correlated to the trait of interest. This method allows the easy detection of QTL in large populations ...
CMS is a phenotypic trait that is widespread among plants and results in the inability of a plant to produce viable pollen [3], using CMS lines to obtain F1 hybrids, which is the preferred method in heterosis breeding. The CMS plants are usually obtained by natural populations [4,5], ...
Mendoza-Alvarez, A.; Guillen-Guio, B.; Baez-Ortega, A.; Hernandez-Perez, C.; Lakhwani-Lakhwani, S.; Maeso, M.-D.-C.; Lorenzo-Salazar, J.M.; Morales, M.; Flores, C. Whole-exome sequencing identifies somatic mutations associated with mortality in metastatic clear cell kidney carcino...