Genome-to-genome distance calculator (GGDC) analysis is another parameter based on genome sequences, which have been proposed to discriminate species [44, 45]. Furthermore, multi-locus sequence analysis (MLSA) has been recommended as a replacement for DDH in species delineation for taxonomic ...
The MachineLearning Impact calculator [86] is used to estimate the carbon footprint.7 The estimates were made on the basis of equivalent calculations on the Google Cloud Platform ’europe-north1’ with 0.21 kg CO2 emission per kWh and the comparison can be seen in Table 5. Table 5. ...
Evaluation of association tests We used the genetic power calculator (http://zzz.bwh.harvard.edu/gpc/) to estimate power to detect T2D association for each of the single variant analyses. All calculations assumed a T2D prevalence of 8%. Figure 4 shows power estimates under optimistic scenarios,...
Average AAI between genome pairs were calculated using the online AAI calculator (http://enve-omics.ce.gatech.edu/aai/index), using default parameter settings. Quantifying SFB in external metagenomes Matching of the ORFs in IGC v9.9 (db.cngb.org/microbiome) against SFB-human-IMAG was performed...
Calculator for confidence intervals of odds ratio in an unmatched case control study. For example groups of cases and controls studied to assess a treatment or exposure to a suspected causal factor. http://www.hutchon.net/confidor.htm. Accessed 4 November 2014. Google Scholar 28. Odds Ratio...
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rosea DSM 24000T and other 21 selected members (all representative genomes from suborder Sorangiineae and a few representative genomes from other families in order Myxoccales) using Genome-to-Genome Distance Calculator (GGDC) server [68] and ANI Calculator [69] respectively. Working data, ...
Menashe I, Rosenberg PS, Chen BE: PGA: power calculator for case-control genetic association analyses. BMC Genet. 2008, 9: 36. Article PubMed PubMed Central Google Scholar Greene CS, Penrod NM, Kiralis J, Moore JH: Spatially uniform relieff (SURF) for computationally-efficient filtering ...
NY15 (NKKAGLFVVQFPKKY) sequence was predicted antimicrobial potent by using APD2: Antimicrobial Peptide Calculator and Predictor. The prediction showed that this peptide form alpha helices and it may have at least three residues on the same hydrophobic surface, and may interact with membranes and...
ON/OFF value and the target. The updated toehold position weight matrix was used as input to the next round of optimization, and at the last round of iteration, the final sequence was composed of nucleotides with the highest probabilities in the position weight matrix. At each iteration, ...