The GBDP scores were calculated with the Genome-to-Genome Distance Calculator (GGDC) 3.0 [58, 59]. The values from Formula 2, one of three formulas (Formula 1, based on high-scoring segment pairs per total length; Formula 2, based on identity per high-scoring segment pairs; and Formula...
Genome-to-genome distance calculator (GGDC) analysis is another parameter based on genome sequences, which have been proposed to discriminate species [44, 45]. Furthermore, multi-locus sequence analysis (MLSA) has been recommended as a replacement for DDH in species delineation for taxonomic ...
Evaluation of association tests We used the genetic power calculator (http://zzz.bwh.harvard.edu/gpc/) to estimate power to detect T2D association for each of the single variant analyses. All calculations assumed a T2D prevalence of 8%. Figure 4 shows power estimates under optimistic scenarios,...
While synthetic biology has revolutionized our approaches to medicine, agriculture, and energy, the design of completely novel biological circuit components beyond naturally-derived templates remains challenging due to poorly understood design rules. Toe
Amiryousefi A, Hyvönen J, Poczai P (2018) iMEC: online marker efficiency calculator. In: Applications in plant sciences, John Wiley and Sons, New York Amiteye S (2021) Basic concepts and methodologies of DNA marker systems in plant molecular breeding. Heliyon 7(10):e08093 Article CAS ...
The DisMeta computational disorder calculator suggests the entire length of the A5 and A10 spidroin constructs as having a 90–100% chance of being disordered (Huang et al., 2014). In contrast, the ELP contains large regions that have much lower probability of disorder, including sections with ...
The genome of the obligate biotrophic phytopathogenic barley powdery mildew fungus Blumeria hordei is inflated due to highly abundant and possibly active transposable elements (TEs). In the absence of the otherwise common repeat-induced point mutation tr
Calculation of fold enrichment was assessed with the online “Enrichment calculator” available at the manufacturer’s website. 2.2.7. Insert confirmation 2.2.7.1. iPSC lines The breakpoints and inserts found in the ε2/ε2 and ε3/ε3 cell lines were identified by long- and short-read ...
Average AAI between genome pairs were calculated using the online AAI calculator (http://enve-omics.ce.gatech.edu/aai/index), using default parameter settings. Quantifying SFB in external metagenomes Matching of the ORFs in IGC v9.9 (db.cngb.org/microbiome) against SFB-human-IMAG was performed...
NY15 (NKKAGLFVVQFPKKY) sequence was predicted antimicrobial potent by using APD2: Antimicrobial Peptide Calculator and Predictor. The prediction showed that this peptide form alpha helices and it may have at least three residues on the same hydrophobic surface, and may interact with membranes and...