The sequence alignment/map (SAM) format and SAMtools 1000 genome project data processing subgroup. Bioinformatics 2009;25: 1-2.Li H, Handsaker B, Wysoker A et al (2009) The sequence alignment/map format and SAMtools.1000 genome project data processing subgroup. Bioinformatics 2...
剩余的则是secondary alignment Typically the alignment designated primary is the best alignment, but the decision may be arbitrary coordinate system 其实简单讲就是从0计数(计算机里面的数组)还是从1计数(数学习惯) Paste_Image.png SAM ,Sequence Alignment/Map format base-calling SAM格式由两部分组成 Demo P...
Genome Project Data Processing S: The Sequence Alignment/Map format and SAMtools Abstract The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short an... H Li,B Handsaker,A Wysoker,... - PubMed 被引量: ...
The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). Article Google Scholar Raine, K. M. et al. Pcap-core. https://github.com/cancerit/PCAP-core (2020). Download references Acknowledgements J.P.W., M.D.S., S.B., M.G., J.T. and I.G.G. ...
The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). PubMed PubMed Central Google Scholar Schiex, T. & Gaspin, C. CARTHAGENE: constructing and joining maximum likelihood genetic maps. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 258–267 (1997). CAS...
The sequence alignment/map format and SAMtools. Bioinformatics. 2009;25:2078–9. PubMed PubMed Central Google Scholar Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis ER, Ding L, Wilson RK. VarScan 2: somatic mutation and copy number alteration discovery...
The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009;25:2078–9. Article PubMed PubMed Central Google Scholar Peng Y, Leung HCM, Yiu SM, Chin FYL. IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics. 2012;28...
The sequence alignment/map format and samtools. Bioinformatics. 2009; 25(16):2078–9. PubMed PubMed Central Google Scholar Weirather JL, de Cesare M, Wang Y, Piazza P, Sebastiano V, Wang X-J, Buck D, Au KF. Comprehensive comparison of pacific biosciences and oxford nanopore technologies ...
The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). Article PubMed PubMed Central Google Scholar Download references Acknowledgements This work was funded by NIH grant R01HG008752 and U01CA233364 to D.Y.Z. The authors thank Jianyi Nie for their editorial ...
The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). Article Google Scholar Li, H. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. Preprint at https://arxiv.org/abs/1303.3997 (2013). Wood, D. E. & Salzberg, S. L. Kraken: ...