| seqkit duplicate -n 2 | seqkit rename 1. 2. 3. 4. 5. 6. rmdup 通过id/名称/序列删除重复的序列 # 去除重复的序列 zcat hairpin.fa.gz | seqkit rmdup -s -o clean.fa.gz # 保存重复序列得到文件 -D duplicated.detail.txt zcat hairpin.fa.gz \ | seqkit rmdup -s -i -o clean.fa.gz...
设置随机种子(默认值11)方便结果重复 seqkit sample A1_1.fq.gz -n 20000 -s 11 -o A1_1_20000...
seqkit rename: new flag-s/--separatorfor setting separator between original ID/name and the counter (default "_").#360 new flag-N/--start-numfor setting starting count number for duplicated IDs/names (default 2).#360 new flag-1/--rename-1st-recfor renaming the first record as well.#...
(start:end) rename rename duplicated IDs replace replace name/sequence by regular expression restart reset start position for circular genome rmdup remove duplicated sequences by id/name/sequence sample sample sequences by number or proportion seq transform sequences (revserse, complement, extract ID....
rename rename duplicated IDs replace replace name/sequence by regular expression restart reset start position for circular genome rmdup remove duplicated sequences by ID/name/sequence sample sample sequences by number or proportion sana sanitize broken single line FASTQ files ...
rename 重命名重复序列ID replace 使用正则表达式修改名称或者序列 restart 重置环状基因组的起始位置 rmdup 通过id/名称/序列删除重复的序列 sample 按数量或比例对序列进行抽样 sana 清理损坏的单行fastq文件 scat real time recursive concatenation and streaming of fastx files ...
renameRename duplicated IDsFASTA/Q concatConcatenate sequences with same ID from multiple filesFASTA/Q+ only restartReset start position for circular genomeFASTA/Q+ only mutateEdit sequence (point mutation, insertion, deletion)FASTA/Q+ only
rename 重命名重复序列ID replace 使用正则表达式修改名称或者序列 restart 重置环状基因组的起始位置 rmdup 通过id/名称/序列删除重复的序列 sample 按数量或比例对序列进行抽样 sana 清理损坏的单行fastq文件 scat real time recursive concatenation and streaming of fastx files ...
concat concatenate sequences with the same ID from multiple files mutate edit sequence (point mutation, insertion, deletion) rename rename duplicated IDs replace replace name/sequence by regular expression restart reset start position for circular genome ...
## 取序列进行重复2次,并进行重新命名cat hairpin.fa|seqkit head-n1|seqkit duplicate-n2|seqkit rename 2.rmdup一个文件内根据id/name/seq来去除重复序列。 -s根据相同的序列来去除重复 -n根据相同的姓名去除重复 -d file.fas保存重复的序列。 -D file_detail.txt重复序列的一些基本信息。