Single-cell disease relevance score (scDRS). Contribute to martinjzhang/scDRS development by creating an account on GitHub.
https://github.com/martinjzhang/scDRS/archive/refs/heads/master.zip step2. 配置脚本参数并运行 ###首先计算得分h5ad_file=your_scrnaseq_data# 输入*h5ad文件路径cov_file=your_covariate_file# 输入*.cov文件路径gs_file=your_gene_set_file# 输入*gs文件路径out_dir=your_output_folder# 数据文件路径...
第一、鉴定表型相关的细胞类型,比如下图: image 第二、发现疾病的subpopulations: image 3、scDRS安装与运行 3.1 下载、安装 #下载安装jupyter pip3 install jupyter #下载安装scDRS git clone https://github.com/martinjzhang/scDRS.git cd scDRS git checkout -b v102 v1.0.2 pip install -e . 3.2 ...
3.1 下载、安装 #下载安装jupyterpip3 install jupyter#下载安装scDRSgit clone https://github.com/martinjzhang/scDRS.gitcdscDRS git checkout -b v102 v1.0.2 pip install -e . 3.2 测试安装成功了没有 python -m pytest tests/test_CLI.py -p no:warnings 3.3 下载测试数据 wget https://figshare...
#下载安装jupyterpip3 install jupyter#下载安装scDRSgitclonehttps://github.com/martinjzhang/scDRS.gitcdscDRS git checkout -b v102 v1.0.2 pip install -e . 3.2 测试安装成功了没有 python -m pytest tests/test_CLI.py -p no:warnings
martinjzhang closed this as completed Feb 28, 2023 Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment Assignees martinjzhang Labels None yet Projects None yet Milestone No milestone Development No branches or pull requests 3 participants Foo...
分析代码可以参考https://martinjzhang.github.io/scDRS/ 以及https://zhuanlan.zhihu.com/p/592128325 注意的点 scDRS的假设是基因集里的基因与疾病有关,与疾病有关的基因会在疾病相关的细胞群体(可以是疾病细胞或健康细胞)里高表达,与基因的方向无关。 scDRS并不是假设基因集里的基因会在疾病细胞里高表达。
A remote sensing semantic change detection model. Contribute to tangkai-RS/ClearSCD development by creating an account on GitHub.