( 2012 ) RNA-SeQC: RNA-seq metrics for quality control and process optimization . Bioinformatics , 28 , 1530 – 1532 .DeLuca DS , Levin JZ , Sivachenko A , Fennell T , Nazaire MD , Williams C , Reich M , Winckler W , Getz G ( 2012 ) RNA-SeQC: RNA-seq metrics for quality ...
RNA-SeQC can be run with or without a BWA-based rRNA level estimation mode. To run without (less accurate, but faster) use the command: java -jar RNASeQC.jar -n 1000 -s "TestId|ThousandReads.bam|TestDesc" -t gencode.v7.annotation_goodContig.gtf -r Homo_sapiens_assembly19.fasta -...
RNA-SeQC: RNA-seq metrics for quality control and process optimization.EBSCO_AspBioinformatics
To study this remarkable diversity of transcripts researchers have developed many techniques, but none is as comprehensive and powerful as high-throughput sequencing of RNA (RNA-seq) ( News and Views, p. 882 ).Nature Biotechnology
Power and limitations of RNA-Seq: findings from the SEQC (MAQC-III) Consortiumdoi:10.14806/EJ.21.A.831Pawe Piotr abaj
Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine. Pharmaceutics, 2016, 8(1).pii: E.Xu J (2016) Comprehensive assessments of RNA-seq by the SEQC consortium: FDA- Led efforts advance precision medicine. Pharmaceutics 15: 8(1)....
Focus on RNA sequencing quality control (SEQC)GENE expressionRNA sequencingNature Biotechnology 32, vii (2014). doi:10.1038/nbt.3025doi:10.1038/nbt.3025NoneNature Biotechnology