ARE1encodes a putative protein that is highly conserved from lower to higher plants with unknown function (Supplementary Figs.3and4a). Overall, ARE1 shares approximately 27–85% identity with ARE1-like proteins from cyanobacteria to flowering plants (Supplementary Fig.4a). In the rice genome, a...
The root-hair transcriptome was analyzed using an Agilent 44 K rice genome microarray (GSE109811). To compare the expression profiles with those in other tissues/organs, we downloaded a publicly available anatomical Agilent rice microarray dataset, GSE21494, from the National Center for Biotechnology ...
As expected, more inversions were observed when we compared the BB genome outgroup (O. punctata) than AA genomes to the IRGSP RefSeq: 337 (total length = 15.16 Mb) (Supplementary Data3), followed by the AA genome outgroup (O. rufipogon): 230 (total length = 12.95 Mb)....
An annotation jamboree was held in Japan with the aim of annotating and manually curating all the genes in the rice genome. Here we present the Rice Annotation Project Database (RAP-DB), which has been developed to provide access to the annotation data. The RAP-DB has two different types ...
Transposable element (TE)-related genes comprise a significant portion of the gene catalog of grasses, although their functions are insufficiently characterized. The recent availability of TE-related gene annotation from the complete genome sequence of r
Unlike the Arabidopsis CCCH family, the distribution of CCCH genes in the rice genome is clearly biased towards the chromosomes 1 to 7 (see Additional file 10). Four CCCH genes are each found on chromosomes 8, 9 and 12, and only one gene, however, is present on chromosome 10 and 11, ...
When we further investigated it from the Rice Genome Annotation Project [68], it showed only one match (located in chromosome 8), suggesting that only one copy exists per haploid genome. P instability factor or PIF[52–56], a family of Class 2 transposable element is widely distributed in ...
Identification of Candidate Genes for Salt Tolerance at the Germination Stage in Japonica Rice by Genome-Wide Association Analysis. Agriculture. 2022; 12(10):1588. https://doi.org/10.3390/agriculture12101588 Chicago/Turabian Style Duan, Yuxuan, Hongliang Zheng, Haoran Wen, Di Qu, Jingnan Cui, ...
2012. Genome-wide identification of rice class I metallothionein gene: Tissue expression patterns and induction in response to heavy metal stress. Funct. Integr. Genomics 12:635-647. doi:10.1007/s10142-012-0297-9GAUTAM, N.; VERMA, P.; VERMA, S.; TRIPATHI, R.; TRIVEDI, P.; ADHIKARI, B...
Define Rice flail. Rice flail synonyms, Rice flail pronunciation, Rice flail translation, English dictionary definition of Rice flail. or nun·chuck or num·chuck n. often nunchakus or nunchucks or numchucks A pair of hardwood sticks joined by a chain or