An annotation jamboree was held in Japan with the aim of annotating and manually curating all the genes in the rice genome. Here we present the Rice Annotation Project Database (RAP-DB), which has been developed to provide access to the annotation data. The RAP-DB has two different types ...
The International Rice Genome Sequencing Project (IRGSP) involves researchers from ten countries who are working to completely and accurately sequence the rice genome within a short period. Sequencing uses a map-based clone-by-clone shotgun strategy; shared bacterial artificial chromosome/ P1-derived ...
The root-hair transcriptome was analyzed using an Agilent 44 K rice genome microarray (GSE109811). To compare the expression profiles with those in other tissues/organs, we downloaded a publicly available anatomical Agilent rice microarray dataset, GSE21494, from the National Center for Biotechnology ...
ARE1encodes a putative protein that is highly conserved from lower to higher plants with unknown function (Supplementary Figs.3and4a). Overall, ARE1 shares approximately 27–85% identity with ARE1-like proteins from cyanobacteria to flowering plants (Supplementary Fig.4a). In the rice genome, a...
5g). Furthermore, a representative combination with a high score was selected to conduct genome-wide scanning for QTNs controlling key agronomical traits42, and a customized project for improvement was proposed (Extended Data Fig. 9c,d). These results demonstrate that the prediction model is ...
The MSU Rice Genome Annotation Project (http://rice.plantbiology.msu.edu) provides high quality annotation of the rice genome to the international rice research community. The rice pseudomolecules for the current annotation (Release 7) have been reconstructed using an optical-map based optimal BAC...
Genome-wide analysis of aquaporins in Japanese Morning Glory (Ipomoea nil). Plants (Basel) 2023, 12(7). Gautam A, Pandey AK. Aquaporins responses under challenging environmental conditions and abiotic stress tolerance in plants. Bot Rev. 2021;87(4):467–95. Article Google Scholar Lu Y, ...
SLS, JEL, FFW, and AJB conceived the project. SLS, PDR, and AJB coordinated and oversaw the project. SLS and PDR managed all genomic sequencing. DP and MCS did the initial assembly of the genome. DR directed the sequence finishing and gap closure activities. MCS, AMP, and ALD created ...
>10 Kb inversion class on chromosome 4 (Supplementary Fig.5and Supplementary Data5), where inversions are mainly concentrated near the centromere on both the short and long arms of chromosome 4. These results demonstrate that the inversions detected appear evenly distributed genome-wide, with one...
Therefore, we initiated a collaborative project to generate one high quality genome assembly for SJ18 to be used as a fundamental tool to help us investigate underlying genome variations in early-matured japonica/Geng. In this study, we report the resources and data sets that were generated and...