The 3000 rice genomes project. Gigascience, 2014, 3: 7K-RGP. The 3,000 rice genomes project. GigaScience 3, 7 (2014).Li, Z., J. Rutger, S. Yu, W. Xu, C. Vijayakumar et al., 2014 The 3,000 rice genomes project. Gigascience 3: 7.Li Z, Fu B-Y, Zhang G, McNally KL (...
“Pan-genome”是指一个clade或品种中的所有个体都包含的一组基因集,其提供一个新的维度来进行研究,即通过基因在基因组上的存在或缺失来评价。在该研究前不久,the 3000 Rice Genome Project (3K RGP)以平均深度14.3x测序了超过3000个水稻基因组。本研究作者筛选出了水稻的pan-genome,并开发了基因组浏览器Rice P...
the 3000rice genomes project with the Nipponbare genome.The SNPs and al-lele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/),which consists of Oracle database having a total number of rows with SNP genotypes close to 60billion (20M SNPs ×3K rice ...
The 3,000 Rice Genome sequencing project is an international effort to sequence the genomes of 3,024 rice varieties from 89 countries. The collaborating centers involved are the Chinese Academy of Agricultural Sciences, BGI Shenzhen, and the International Rice Research Institute (IRRI). The consortiu...
We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/), which consists of Oracle database having a total number...
3K RGThe BAM比对文件和变异检测VCF文件下载地址: https://aws.amazon.com/public-data-sets/3000-rice-genome/ 3K RG 项目介绍:http://iric.irri.org/resources/3000-genomes-project 3K RG的SVs和PAVs数据链接:https://doi.org/10.6084/m9.figshare.c.3876022.v1. ...
24 The 1000 Genomes Project Consortium. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56–65 (2012). 25 Fukushima Prefectural Museum. Sanganji Kaizuka (in Japanese). (Fukushima Pre- fectural Museum, Fukushima, Japan, 1988). 26 Pairwise alignment of panTro2 ...
appears that PC1 corresponds to the degree of genetic contribution from the Jomon people to the other Japanese Archipelago populations, whereas PC2 separated the Ainu from Sanganji Jomon. When the genomic data of 1000 Genomes Project East Asians24were included in the PCA analysis (Figure 2b), ...
This project also encouraging the global rice community to employ data present in the 3000 rice genomes project for establishing various global public rice genetic/genomic database, which in turn will promote rice-breeding technology in the future. Thus, in this chapter, authors made an attempt ...
The 3,000 Rice Genome sequencing project is an international effort to sequence the genomes of 3,024 rice varieties from 89 countries. The collaborating centers involved are the Chinese Academy of Agricultural Sciences, BGI Shenzhen, and the International Rice Research Institute (IRRI). The consortiu...