The rice EST database was searched using the tBLASTn program to identify cDNA clones with homology to 70 or 32 kDa subunits of replication protein A. Rice EST clones AU068958 and AU030219 were found to have significant homology to RPA70kDa subunit and RPA32kDa subunit, respectively. The inse...
This was further supported by higher abundance of ESTs for the intron-rich genes in the rice EST database. Higher number of introns may be providing post-transcriptional stability to the mRNA leading to higher expression levels. Here we first report the detailed genome wide analysis of ...
网络水稻基因组数据库 网络释义 1. 水稻基因组数据库 中科院基因组信息学中心华大基因研究中心水稻基因组数据库(Rice Genome Database) web.lib.pu.edu.tw|基于3个网页 例句
8 p. the rice kinase database a phylogenomic database for the rice kinome 5 p. Contribution of the Tos17 retrotransposon to rice functional genomics 5 p. the rice pipeline a unification tool for plant functional genomics 5 p. RICD A rice indica cDNA database resource for rice functiona...
Chung S.K. Cho and S.H. Ok contributed equally to the investigation reported here. All EST data are publicly available through the National Center for Biotechnology Information (NCBI, USA; GenBank dbEST Accession No. CB209721~CB214919).
All the unique ESTs were submitted to the EST database of GenBank http://www.ncbi.nlm.nih.gov/dbEST (accession no. HO188242-HO188793). The library served to elucidate transcriptional changes and subsequent differential responses in the rice variety TN1 triggered by infestation with the rice ...
length of the target protein; class IV, similarity to a protein of unknown function predicted by genome sequence annotation; class V, match to an EST nucleotide sequence but not to a known protein; class VI, no hit at a threshold probability score of 10220 to any entry in the database. ...
The EST analysis was performed using gene expression evidence search tools against the rice data available at TIGR. We analyzed the expression differences between japonica (cv. Nipponbare) and indica (cv. 9311) using the ESTs in the database (http://www.Plantgdb.org). Sequence and phylogenetic...
Primers based on EST sequences, which would also amplify intron sequences and hence increase the chance of obtaining polymorphism within the region flanked by RM23 and RM9 were then designed from the RGP database. Polymorphic markers were tested for co-segregation with salt tolerance in a sub...
Wu TD, Watanabe CK: GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics. 2005, 21: 1859-1875. 10.1093/bioinformatics/bti310. Article PubMed CAS Google Scholar Rice Annotation Project: The rice annotation project database (RAP-DB): 2008 update. Nucleic ...