(100.00% : N/A) 23150364 + 0 paired in sequencing 11575182 + 0 read1 11575182 + 0 read2 22447746 + 0 properly paired (96.96% : N/A) 23150364 + 0 with itself and mate mapped 0 + 0 singletons (0.00% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate ...
Consequently, the percentage of properly paired reads has decreased. However, the number of differentially expressed genes was larger than in the unprocessed data and their enrichment analyses results, except for the adapter-trimming step, were comparably significant. Applied to ChIP-seq data, trimming...
BreakDancer-1.3.6, released under GPLv3, is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inte...
But when she gets her vengeance, it becomes clear that she is an Iron Widow, a rare kind of female pilot who can sacrifice males to power up Chrysalises instead. To tame her frightening yet valuable mental strength, she is paired up with Li Shimin, the strongest male pilot in Huaxia, y...
the crescendos and decrescendos are perfectly timed, it is a ROLLERCOASTER. Ayu’s voice really has to reach in this one and she delivers, it’s got almost a showtune-esque theatricality to it, and I like the “Well, eff you then!” sound it ends up having when paired with the lyric...
MarkDuplicates is "more correct" in the strict sense. Rmdup is more efficient simply because it does handle those tough cases. Rmdup works for single-end, too, but it cannot do paired-end and single-end at the same time. It does not work properly for mate-pair reads if read lengths are...
1999960 + 0 properly paired (100.00% : N/A) 2000000 + 0 with itself and mate mapped 0 + 0 singletons (0.00% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5) 1.
116 + 0 properly paired (64.80% : N/A) 179 + 0 with itself and mate mapped 0 + 0 singletons (0.00% : N/A) 62 + 0 with mate mapped to a different chr 32 + 0 with mate mapped to a different chr (mapQ>=5) So I got 182 records out (plus the header of course). How many...
Simple stats samtools flagstat NA06984.chrom16.ILLUMINA.bwa.CEU.low_coverage.20100517.bam 10182494 in total 0 QC failure 223627 duplicates 9861117 mapped (96.84%) 10095646 paired in sequencing 5049066 read1 5046580 read2 8174084 properly paired (80.97%) ...
Is your feature request related to a problem? Please specify. Hi, I have assembled a genome, and I am trying to do a PSMC analysis. I forgot that I have to only use autosome scaffolds, so I am trying to filter autosomes (bat genome) usin...