Reads Mapped Confidently to Genome 比对到参考基因组并得到转录本GTF信息支持的Reads占总Reads中占的比例;如果一条Reads既可以比对到一个基因的外显子区(exon区),又可以比对到非外显子区(非exon区),那么算Reads比对到外显子(exon区) Reads Mapped Confidently to Intergenic Regions 比对到基因组的基因间区域的Re...
Reads Mapped to Genomes:比对到参考基因组上的Reads在总Reads中占的比例; Reads Mapped Confidently to Genome:比对到参考基因组并得到转录本GTF信息支持的Reads在总Reads中占的比例; Reads Mapped Confidently to Intergenic Regions:比对到基因间区域的Reads在总Reads中占的比例; Reads Mapped Confidently to Intronic ...
BreakDancer-1.3.6, released under GPLv3, is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions, inte...
The trim- ming will stop when the read can be confidently mapped or K = 0. In our experiments, the initial value of K is set as 8. Algorithm 2 RAUR 1: Input: reference sequence, illumina Reads in fastq format, parameter K(K > 0); 2: Output: alignment_file in sam format; 3: ...
allowing the approximately known physical chromosomal distance between the read pair to be used to increase both the sensitivity and specificity of an alignment (that is, a repetitive read that cannot be confidently mapped on its own can often be placed using the information provided by its partner...
Reads Mapped Confidently to Genome 比对到参考基因组并得到转录本GTF信息支持的Reads占总Reads中占的比例;如果一条Reads既可以比对到一个基因的外显子区(exon区),又可以比对到非外显子区(非exon区),那么算Reads比对到外显子(exon区) Reads Mapped Confidently to Intergenic Regions ...
Reads Mapped Confidently to Genome 比对到参考基因组并得到转录本GTF信息支持的Reads占总Reads中占的比例;如果一条Reads既可以比对到一个基因的外显子区(exon区),又可以比对到非外显子区(非exon区),那么算Reads比对到外显子(exon区) Reads Mapped Confidently to Intergenic Regions ...
README BreakDancer-1.1, released under GPLv3, is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It includes two complementary programs. BreakDancerMax predicts five types of structural variants: insertions, deletions, inversions,...