This tool supports various applications at the RCSB PDB website. First, a structure alignment web service calculates pairwise alignments. Second, a stand-alone application runs alignments locally and visualizes the results. Third, pre-calculated 3D structure comparisons for the whole PDB are provided...
Another specialized RCSB.org data delivery resource is the Pairwise Structure Alignment tool that calculates alignments using different trusted methods and displays sequence alignments and superposed 3D visualization. Comparisons can be made for any protein in the PDB archive and/or structures in uploaded...
Here, we present a comparison tool for calculating both 1D protein sequence and 3D protein structure alignments. This tool supports various applications at the RCSB PDB website. First, a structure alignment web service calculates pairwise alignments. Second, a stand-alone application runs alignments ...
The Protein Comparison Tool, accessible using Java Web Start (http://www.rcsb.org/pdb/workbench/workbench.do?action=menu), is a critical tool for relating and comparing different structures. It provides several turnkey methods for pairwise sequence and structure alignments. For example, Fig. 4 ...
This tool supports various applications at the RCSB PDB website. First, a structure alignment web service calculates pairwise alignments. Second, a stand-alone application runs alignments locally and visualizes the results. Third, pre-calculated 3D structure comparisons for the whole PDB are provided...