3) structure alignment 结构比对 1. The sequence alignment result,from structure alignment tool MUSTANG combined with manual inspection,has been used to generate a profile HMM of Globin-like fold. 以SCOP中的Globin-like折叠为研究对象,选择其中序列同一性小于25%的17个代表性蛋白质为训练集,采用机器...
9 RegisterLog in Sign up with one click: Facebook Twitter Google Share on Facebook pairwise Thesaurus Medical Encyclopedia Wikipedia Related to pairwise:Pairwise disjoint,Pairwise comparison (ˈpɛəˌwaɪz) adv in pairs Collins English Dictionary – Complete and Unabridged, 12th Edition ...
Structure comparison can provide useful information to identify functional and evolutionary relationship between proteins. With the dramatic increase of protein structure data in the Protein Data Bank, computation time quickly becomes the bottleneck for
Index-based similarity search for protein structure databases. These proteins are then aligned to the queryprotein using a popular pairwise alignment tool such as VAST. We also develop anovel statistical model to ... ?AMO?LU, ORHAN,T Kahveci,AK Singh - 《Journal of Bioinformatics & Computationa...
p pBackground/p pWhile the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins ... ML Sierk,ME Smoot,EJ Bass,... - 《Bmc Bioinformatics》 被引量: 41发表: 2010年 Assessing secondary structure assignment of protein struc...
Alignment errors remain the main cause of low-quality structure models. A bioinformatics tool to refine alignments is needed to make protein alignments more accurate.We developed the SFESA web server to refine pairwise protein sequence alignments. Compared to the previous version of SFESA, which ...
High Performance Biological Pairwise Sequence Alignment: FPGA versus GPU versus Cell BE versus GPPAssessing secondary structure assignment of protein structures by using pairwise sequence‐alignment benchmarksPairwise sequence alignment using a PROSITE pattern-derived similarity score....
Don't forget to free the CIGAR structure when finished.typedef struct parasail_cigar_ { uint32_t *seq; int len; int beg_query; int beg_ref; } parasail_cigar_t; parasail_cigar_t* parasail_result_get_cigar( parasail_result_t *result, const char *seqA, int lena, const char *seqB, ...
Protein sequence alignment is essential for a variety of tasks such as homology modeling and active site prediction. Alignment errors remain the main cause of low-quality structure models. A bioinformatics tool to refine alignments is needed to make protein alignments more accurate.We developed the ...
The alignment quality of NetCoffee2 and Twadn both decrease when randomizing both temporal aspect and structure aspect of network in Fig. 6. This illustrates that Twadn really capture the time information of dynamic network compared with NetCoffee2. In other hand, the node-correctness of Twadn...