select my_chain, chain A 显示残基名称: 使用label命令来显示残基名称: python label my_chain, resn 这里的resn代表残基名称(residue name)。 3. 调整残基名称的显示样式(可选) 你可以通过调整label命令的参数来改变残基名称的显示样式,例如字体大小、颜色等。例如: python label my_chain, resn, col=red...
To retrieve the color for a residue as identified in an expression, you can either iterate over aselection from the PyMOL command lineiterate all, print colorAlternatively, this can be done from a Python script.import pymolpymol.color_list = []cmd.iterate(‘all’, ‘pymol.color_list....
三、interfaceResidue 插件简介interfaceResidue插件是一个用于分析蛋白质复合物接触界面残基的 PyMOL 插件。
PyMOL简介及相关操作
near_res 选择直接和s1相连的原子 Pymol select vicinos, nbr. resi 10 另外,利用括号可以多重逻辑选择,如选择chain b,但不选择其中的residue 88: Pymol select chain b and (not resi 88) 注:当有多个括号时,Pymol优先处理最里层括号里面的内容。 35 ?关于cartoon ? cartoon的命令格式如下: ? Pymol ...
用pymol来做,pdb没有氢的需要加氢,选肽段,find-polar contacts-to others excluding solvent,all-show lines,手工选取形成氢键的残基,显示为sticks,关闭lines,标记by residue,记录残基号。在pml文件里输入残基号,用命令显示选择内的氢键。 The "polar contacts" mentioned above are probably better at finding hydro...
ss 4. Color chain A and B •color blue, chain A color red, chain B 5. Create a surface display for chain A and chain B •create obj_ab, chain A or chain B •show surface, obj_ab 6. Find and Color the active site residue select zn, resn ZN and obj_ab show...
2. Select protein atoms within 5A of selected atoms in last step# 3. Label alpha-c(ca) of selected residues with residue name and residue position# 4. Set label color back# 5. Set background white# 6. Hidden hydrogenesselectsele, indinavir ¬hydroselectsele, byres (sele expand5) &...
Pymol 使用说明 PyMol Tutorial http://ihome.cuhk.edu.hk/~b102142/pymol/pymol_tutorial.html[2014/6/12 11:19:32][return to KB Wong's home page]Through this tutorial, you will be able to generate the following figures:You can download the files for the tutorials here Files included:1w2...
常用selector Selector 简写 Identifier及例子 symbol e. chemical-symbol-list 周期表中的元素符号 Pymol> select polar, symbol o+n name n. atom-name-list pdb文件中的原子名字 Pymol> select carbons, name ca+cb+cg+cd resn r. residue-name-list ...