3.3 Filtering and Selection Options in Align (500 words) Section 4: Practical Usage Examples 4.1 Simple Structure Alignment (500 words) - Step 1: LoadingStructures - Step 2: Aligning the Structures - Step 3: Visualization and Analysis 4.2 Aligning Multiple Structures (600 words) - Step 1: Loa...
点击analyze,选择pairwise structure alignment; 上传需要比对的结构文件(即刚刚下载的预测文件,以及要比对的别人解析的晶体文件),Chain ID填写需要比对的蛋白的某一条肽链,后面的氨基酸起止位置不填默认全部比对;至于比对方法,我一般用TM-ALIGN,这里我转载一下别人的解释: TM-align是一种基于拓扑结构的蛋白质结构比对...
Align proteins with CA fitSelecting secondary structuresExamples:select helix, (ss h)select sheet, (ss s)select loop, (ss l+’’)Color by atom type from a scriptThe “util” module contains a number of functions that color the atoms according to type, withdifferent colors for the C atoms...
Results: A simple and intuitive interface, PyMod, between the popular molecular graphics system PyMOL and several other tools (i.e., [PSI-] BLAST, ClustalW, MUSCLE, CEalign and MODELLER) has been developed, to show how the integration of the individual steps required for homology modeling ...
Sorry forgot to add, I want to use multiple structures Hi folks, Sorry if this has already been asked but can I export the sequence alignment from PyMOL? I am looking to use cealign to do this (on windows) and I need the structural alignment based sequence alignment. ...
Re: [PyMOL] Capping of multiple pdb file using python script in pymolThomas Holder Re: [PyMOL] Capping of multiple pdb file using python script in pymolshivani sharma [PyMOL] extend electron density map/ align map to pdbFinton, Kathryn ...
2004/07/13 [PyMOL] align function in MacPyMOL (v0.95) and the X11 hybrid version Wataru Kagawa 2004/07/13 Re: [PyMOL] PyMOL 0.96 Released Yu Chen 2004/07/13 [PyMOL] Align/pair_fit question Luke Rice 2004/07/13 RE: [PyMOL] polar surface area with pymol Warren DeLano 2004...
[PyMOL] Align more than two structures Neena Susan Eappen Re: [PyMOL] Align more than two structures Saurabh Gayali [PyMOL] Plugin upload. Wael Azzam via PyMOL-users Re: [PyMOL] Plugin upload. William Tao Re: [PyMOL] Plugin upload. Wael Azzam via PyMOL-users Re: [PyMOL] ...