PEAKS Online is distributed as a software package that includes a Server licence with multiple Client access. The base package of PEAKS Online includes 5 Client licences and can utilise up to 128 logical cores/threads. However, PEAKS Online is ready to scale, and researchers can increase the pe...
The article reports about benefits of version 3.0 of BioinformatIQ which is designed to be a standalone software package suitable for all proteomics laboratories. Designed to provide the infrastructure for the research-scale or industrial scale proteomics lab, BioinformatIQ integrates and controls ...
Herein, we have developed MASH Suite Pro, a comprehensive software tool for top-down proteomics with multifaceted functionality. MASH Suite Pro is capable of processing high-resolution MS and tandem MS (MS/MS) data using two deconvolution algorithms to optimize protein identification results. In ...
MetaMorpheus is a bottom-up proteomics database search software with integrated post-translational modification (PTM) discovery capability. This program combines features of Morpheus and G-PTM-D in a single tool. Check out the wiki page for software details! Major Features Database Search: A robus...
Software programs including FASTA and BLASTP are used to perform the calculations. In trying to predict protein function, use can be made of evolutionary relationships to proteins whose structure has already been determined. Applications Biomarker discovery: A biomarker is a biological measure such as...
The raw data files were processed and quantified using PatternLab for Proteomics software36. Peptide-sequence matching (PSM) was performed using the Comet algorithm37 against the protein-centric human database NeXtProt38 (downloaded January 29, 2017). A target-decoy strategy was employed. The search...
Last but not least, PTXQC is easy to install and use and represents the first QC software capable of processing MaxQuant result tables. PTXQC is freely available at https://github.com/cbielow/PTXQC. 展开 关键词: MaxQuant quality control PTXQC ...
A plethora of software suites and multiple classes of spectral libraries have been developed to enhance the depth and robustness of data-independent acquisition (DIA) data processing. However, how the combination of a DIA software tool and a spectral library impacts the outcome of DIA proteomics an...
In addition, there are a collection of software tools that implement a specific set of methods or lack accommodations to import data from multiple analysis platforms [17, 26,27,28,29,30,31,32,33,34,35]. We present tidyproteomics, an open-source R package for the post-analysis and ...
The analyses were performed using STRING online software with a medium confidence level (0.4), providing the significantly enriched GO terms, KEGG and Reactome pathways. The vertical axis displays the significantly enriched biological functions. The horizontal axis indicates the strength of enrichment, ...