Back to Software Overview Spectronaut® The gold standard for DIA proteomics analysis Thanks to deep-learning augmented peptide identification, you can now find more precursors and proteins in your samples than ever before. We have further broadened our support for the latest mass spectrometry data ...
import of mass spectrometry proteomics data analysis software reports.George Rosenberger
Pathway Mapping Service: Your proteomics results are mapped onto canonical pathways and new interaction networks using Qiagen Ingenuity® Pathway Analysis software. Please inquire for more information. * CST is an officially licensed provider of TMT services. Available for customers based in the US, ...
Data analysis for single-cell proteomics Optimized for data generated from single-cell proteomics regardless of the workflow undertaken (TMT or DIA). Proteome Discoverer Software Thermo Scientific Proteome Discoverer Software offers predefined workflows to support both MS2 and MS3-based TMT qu...
Here, we introduce the requirements for rigorous spatial proteomics data analysis, as well as the statistical machine learning methodologies needed to address them, including supervised and semi-supervised machine learning, clustering, and novelty detection. We present freely available software solutions ...
FragPipe is open source and the output is currently supported by the following software projects: Skyline AlphaPeptDeep AlphaPeptStats AlphaMap directLFQ DIA-NN MSstats picked_group_fdr FragPipe-Analyst Key references Database search Kong, A. T., Leprevost, F. V., Avtonomov, D. M., Mell...
All other output types are there to simplify the analysis when using MS Excel or similar software. The numbers of precursors and proteins reported in different types of output files might appear different due to different filtering used to generate those, please see the descriptions above. All ...
Numerous software tools exist for data-independent acquisition (DIA) analysis of clinical samples, necessitating their comprehensive benchmarking. We present a benchmark dataset comprising real-world inter-patient heterogeneity, which we use for in-depth
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