Proteomics data analysis toolTom Taverner
proteomics detected 980 DAPs (absolute fold change ≥ 1.2,p < 0.05) between V79 cells cultured in the DUGL and AGL. Of these, 576 proteins were up-regulated and 404 proteins were down-regulated in V79 cells cultured in the DUGL. KEGG pathway analysis revealed that seven pathways ...
2.8. Public database: further validation The mRNA and protein expressions of PRDX2 in normal and cervical cancer tissues were validated in GEPIA2 (Gene Expression Profiling Interactive Analysis 2) (http://gepia2.cancer-pku.cn/#index) and The Human Protein Atlas (https://www.proteinatlas.org...
reanalysis because each row/line of the SDRF can be processed individually. In addition, it facilitates meta-analysis with simple operations such as merging different SDRFs coming from different datasets or splitting an SDRF for a given dataset by a specific property of the data file or the ...
In this thesis, I detail my 4-year efforts in developing bioinformatics tools and algorithms to address the growing demands of current proteomics endeavors, covering a range of facets such as large-scale protein expression profiling, charting post-translation modifications as well as protein-protein ...
R data inst man vignettes .Rbuildignore .gitignore DESCRIPTION NAMESPACE NEWS.md README.md README Introduction TheRforProteomicspackagedistributes and extends the use-cases described in theUsingRand Bioconductor for proteomics data analysismanuscript (pubmedandpre-print). The package illustrates howRand...
32、omics 2001, 1: 699-7047. Cash P, Argo E, Ford L, et al. A proteomic analysis of erythromycin resistance in Streptococcus pneumoniae. Electrophoresis 1999, 20: 2259-22688. Gygi SP., Corthals GL, Zhang Y, et al. Evaluation of two-dimensional electrophoresis-based proteome analysis techn...
See Raw data formats for information on supported formats. Click Add FASTA, add one or more sequence databases in UniProt format. If you want to use a spectral library, click Spectral library and select the library. Alternatively, for library-free analysis, select FASTA digest for library-free...
In this framework, PRIDE is the initial submission point for tandem MS data. Currently, the first pilot PX submissions (containing raw data and processed results) have already been carried out (http://proteomecentral.proteomexchange.org) and the system is now starting to accept regular submissions...
(c) Western blot analysis of selected targets (ASAP1; VCP) and controls (neuronal tubulin beta 3, TUBB3; GAPDH) in hiPSC-derived motoneurons. (d) Quantification of Western blot signals of the indicated candidates. TUBB3 signal was used for normalization. Histogram bars represent the average ...