Retrieve Protein Sequence in FASTA Format from the KEGG DatabaseNan Xiao
The Conserved Domain Database (CDD) is a freely available resource for the annotation of sequences with the locations of conserved protein domain footprints, as well as functional sites and motifs inferred from these footprints. It includes protein domain and protein family models curated in house ...
A sequence in FASTA format begins with a single-line description, followed by lines of sequence data. The definition line (defline) is distinguished from the sequence data by a greater-than (>) symbol at the beginning. The word following the>symbol is the identi...
The Antibiotic Resistance Gene-ANNOTation (ARG-ANNOT) contains database consists of a single file covering nucleotide/protein sequences in FASTA format from all antibiotic classes. This is used to identify extant and putative new antibiotic resistance (AR) genes in bacterial genomes. The virulence ...
Input format The (PS)2-v2 server is an easy-to-use web server (Figure2). Users input the query protein sequence in FASTA format. The server provides three modes (Automatic, Manual and 'Use this template') for choosing template(s) (Figure2A). The default mode is 'Automatic'. In this...
Queries can be 1) keywords, 2) PDB or SCOP IDs, or 3) protein sequences in FASTA format. In the case of a protein sequence, InterPare provides a structural domain assignment module using PDB-ISL [48] and PSI-BLAST [49, 50] to assign homologous domains in SCOP to the queried ...
ComplementRegulatoryDomain (CoReDo) is a simple and efficient tool for prediction of complement regulatory RCA proteins. The web server accepts protein sequence in FASTA format as input. The submitted sequence is scanned against the set of motifs (either on the basis of four motifs or five motifs...
Alternatively, you can obtain a protein sequence in FASTA format by following http://www.uniprot.org/uniprot/uniprot_id.fasta For example, the data for protein B5ZC00 can be found at http://www.uniprot.org/uniprot/B5ZC00. Given: At most 15 UniProt Protein Database access IDs. Return:...
Read protein sequences in FASTA format Read protein sequences in PDB format Sanity check of the amino acid types appeared in the protein sequences Protein sequence segmentation Auto cross covariance (ACC) for generating scales-based descriptors of the same length 20+ pre-computed 2D and 3D descri...
In the present study, we used eukaryotic essential and non-essential genes obtained from a reference gene-essentiality database and two independent curations. Initially, protein sequences (FASTA) representing essential and non-essential genes derived from large-scale functional genomics experiments six ...