However, known and predicted interactions are scattered over multiple resources, and the available data exhibit notable differences in terms of quality and completeness. The STRING database (http://string-db.org) aims to provide a critical assessment and integration of protein-protein interactions, ...
PPI Protein-protein Interaction 在OntoProtein和BioBridge,KeAP中都做了这个实验,一开始感觉很难理解所以专门去看了一些文献。 STRING数据集,使用GNN学习Protein-protein Interaction Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction 贡献1 提出一种方法去分割数据集...
The comparison of data available in terms of protein, protein–protein interactions, and publications in five different protein–protein interactions databases is presented in Table 7.1. Table 7.1. Statistics of protein–protein interaction data in different databases* DatabaseProteinsProtein-protein interac...
This DIP database can be used as a reference when evaluating the reliability of high-throughput, protein–protein interaction data sets, for the development of prediction methods, as well as in the studies of the properties of protein interaction networks. It is freely available at http://dip....
STRING database (Search Tool or the Retrieval o Inter- acting Genes/Proteins) is dedicated to such unctional asso- ciations between proteins, on a global scale. Protein–protein interaction in ormation can already be retrieved roma number o online resources. First, primary interaction databases (...
protein database references found in interaction records to current protein sequence records. Operations performed during this mapping are described by a mapping score that may provide valuable feedback to source interaction databases on problematic references that are malformed, deprecated, ambiguous or ...
et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39, D561–D568 (2011). CAS PubMed Google Scholar Higueruelo, A. P. et al. Atomic interactions and profile of small molecules disrupting protein–protein ...
We used the Search Tool for the Retrieval of Interacting Genes/Proteins database (STRING v10.5)45to construct the PPI network associated with HUD. Given a list of the proteins as input, STRING can search for their neighbor interactors, the proteins that have direct interactions with the inputted...
Protein–protein interaction networks have a crucial role in biological processes. Proteins perform multiple functions in forming physical and functional interactions in cellular systems. Information concerning an enormous number of protein interactions
This 3D structure information is a good source of data for the study of protein interfaces. Here, we introduce a large-scale protein interaction interface database called InterPare (http://interpare.net or http://psimap.org). InterPare presents interfaces between protein domains identified by ...