The comparison of data available in terms of protein, protein–protein interactions, and publications in five different protein–protein interactions databases is presented in Table 7.1. Table 7.1. Statistics of
The STRING database (http://string-db.org/) aims to provide such a global perspective for as many organisms as feasible. Known and predicted associations are scored and integrated, resulting in comprehensive protein networks covering > 1100 organisms. Here, we describe the update to ...
et al. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39, D561–D568 (2011). CAS PubMed Google Scholar Higueruelo, A. P. et al. Atomic interactions and profile of small molecules disrupting protein–protein ...
PPI Protein-protein Interaction 在OntoProtein和BioBridge,KeAP中都做了这个实验,一开始感觉很难理解所以专门去看了一些文献。 STRING数据集,使用GNN学习Protein-protein Interaction Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction 贡献1 提出一种方法去分割数据集...
This DIP database can be used as a reference when evaluating the reliability of high-throughput, protein–protein interaction data sets, for the development of prediction methods, as well as in the studies of the properties of protein interaction networks. It is freely available at http://dip....
(b). The networks a1 & b1 represent the total proteins expressed while a2 & b2 highlight the proteins involves in various processes. The protein-protein interactions were analyzed using the String database (version 9.1, Available online:http://string-db.org/) with the confidence score > ...
von Mering C, Huynen M, Jaeggi D et al (2003) STRING: a database of predicted functional associations between proteins. Nucleic Acids Res 31:258–261 Google Scholar Westbrook J, Feng Z, Jain S et al (2002) The Protein Data Bank: unifying the archive. Nucleic Acids Res 30:245–248 ...
protein database references found in interaction records to current protein sequence records. Operations performed during this mapping are described by a mapping score that may provide valuable feedback to source interaction databases on problematic references that are malformed, deprecated, ambiguous or ...
The protein–protein interaction (PPI) network was constructed with the Search Tool for the Retrieval of Interacting Genes (STRING) database (https://string-db.org) with a minimum interaction confidence score of 0.4. To further investigate the interplay between circulating protein levels, we carried...
This 3D structure information is a good source of data for the study of protein interfaces. Here, we introduce a large-scale protein interaction interface database called InterPare (http://interpare.net or http://psimap.org). InterPare presents interfaces between protein domains identified by ...