Of the 170 novel isoforms, 104 contained a CDS and were determined to have protein-coding potential. The predicted ORFs of the 104 protein-coding transcripts were matched against sequences in the non-redundant
As expected, cell-cycle and p53 DE-TARs were found to be strongly enriched for known protein-coding RNAs (Figure2A, Additional file1: Figure S10). Although STAT3 is known to regulate the expression of many mRNAs, STAT3 DE-TARs were not enriched for coding sequence (CDS) and 5′UTRs and...
3D, E), which serves as a protein–protein interaction site for several other factors32, whereas the sole tryptophan residue within UNKIDR, W622, inserts into either of the defined tryptophan (W)-binding pockets on the convex surface of CNOT9 (Fig. 3F, G). We denote W622 and its ...
The transcription units (TUs) of a gene circuit include three biological elements: the promoter, the coding sequence (CDS), and the terminator. The functions of TUs are represented by substances encoded in CDSs, and the initiation and regulation of CDSs occur at the promoter level. Therefore, ...
CDS 英文缩写CDS 英文全称Sequence coding for amino acids in protein 中文解释蛋白质编码区 缩写简介 Sequence coding for amino acids in protein(includes stop condon) CDS意思,CDS的意思,CDS是什么意思?爱站小工具网缩写频道为您提供有关于CDS的解释和缩写,蛋白质编码区的英文缩写是什么...
84 and the coding sequence (CDS) length obtained from ensembl. Ribosome density was then calculated as RNaseI_CDS/CDS length. P-body RNAs were obtained from48. RNAs with over 8-fold higher abundance in the sorted fraction and Benjamini–Hochberg85 adjusted P value less than 0.01 were deemed...
Finally, structures present in the coding sequence (CDS) of mRNAs may act as functional, post-transcriptional regulatory motifs (e.g., structures that cause ribosomal pausing, ribosomal frame-shifting, miRNA binding regions, etc.), but they appear to occur less frequently than in the 3′UTR, ...
CDS: coding sequence CIP: calf intestinal alkaline phosphatase CLIP: UV crosslinking followed by immunopurification CLS: crosslinking score DTT: dithiothreitol FDR: false discovery rate GO: Gene Ontology gPAR-CLIP: global PAR-CLIP PAR-CLIP: global photoactivatable-ribonucleoside-enhanced cros...
Description CDSbank is a database that stores both the protein-coding DNA sequence (CDS) and amino acid sequence for each protein annotated in Genbank. CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5??? and 3??? ends, full taxonomic data, and a heuristic ...
the sense that they yielded largely non-overlapping sets of hits and differed in their ability to recover known cases of TE-derived CDS. The probabilistic analysis of TE-derived exon sequences indicates that these sequences have low protein coding potential on average. In particular, non-...