Wgsim (https://github.com/lh3/wgsim) was used to simulate whole-genome sequencing reads from the potato, tomato and eggplant genomes with parameters: ‘-e 0 -d 350 -N 500000000 -1 150 -2 150 -r 0 -R 0 -X 0’. The simulated reads mapping and SNP calling were performed using the ...
In the big-bag trial (B2), drought stress began at the five-leaf stage and was carried on until maturity (> BBCH 90). Drip-irrigation was used to water the plants and drought stress was achieved by prolonging the time interval between two irrigations to limit the irrigation volume to ...
SMRT-Analysis software package v3.0 (https://github.com/ben-lerch/IsoSeq-3.0/blob/master/README.md) was used for Iso-Seq data analysis. First, reads of insertion (ROIs) were generated using the minimum filtering requirement of 0 or greater passes of the insert and a minimum read quality ...
Biofumigant plants (e.g. white mustard, leaf radish) can reduce the early blight disease progression in the crop (Volz et al. 2013). Tuber harvest and storage Alternaria solani also can infect the potato tuber . The fungus cannot infect through the intact periderm, and so the risk of ...
outside the cells. Thus, the changes in proline and soluble sugar may play a key role in the osmotic regulation by low-temperature in potato leaf, which is consistent with the study of Wan Y-Y et al. [66]. In this paper, a total of 6381 DEGs were identified as responsive to low ...
(http://broadinstitute.github.io/picard/). The depth along each contig was calculated with samtools depth function (v.1.9)43for each type of (short and long) reads and the depth at each position of each contig was taken as the sum of all types. Each contig was dissected into 10-kb ...
Potato (Solanum tuberosum L.) is the most important tuber crop worldwide. Efforts are underway to transform the crop from a clonally propagated tetraploid into a seed-propagated, inbred-line-based hybrid, but this process requires a better understanding
Deep learning for image-based cassava disease detection. Front. Plant Sci. 2017, 8, 1852. [Google Scholar] Sladojevic, S.; Arsenovic, M.; Anderla, A.; Culibrk, D.; Stefanovic, D. Deep neural networks based recognition of plant diseases by leaf image classification. Comput. Intell. ...
Sweet potato vine (SPV) is the by-product of sweet potato, consisting of leaf, stem, and stalk. In a previous study, we suggested that adding fresh SPV to gilt diet improved follicular development and thus benefited reproductive performance in Chinese Meishan (MS) gilt [1]. A large number...
Moreover, it can improve the accuracy of automatic leaf disease detection as has been shown in [63]. Adaptive Histogram Equalization (AHE) is an additional algorithm that reduces HE’s limitations by increasing the local contrast of the input images. Contrast Limited Adaptive Histogram Equalization...