最近在做一项有关大鼠野生种与改良种的人工选择方向相关分析,涉及到混池测序的Fst计算。查阅文献找到一些可以对混池测序数据分析的已发表软件,如 popoolation2qtlseqrmutmap、mutmap+、qtl-seq; PoPoolation2 是…
Poolfstat 使用 最近一篇NC中"A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy"提到了Poolfstat,其发表于2021年11月(引用文章),实现了对Pool-seq数据的FST估计,CRAN位置:Poolfstat. 继续查阅发现早在2018已首次被作者发表(文章链接),2020年Poolfstat开始被广...
最近一篇NC中" A large and diverse autosomal haplotype is associated with sex-linked colour polymorphism in the guppy "提到了Poolfstat，其发表于2021年11月( 引用文章 ),实现了对Pool-seq数据的FST估计，CRAN位置: Poolfstat . 继续查阅发现早在2018已首次被作者发表( 文章链接 )，2020年Poolfs...
Our simulation study results indicate Pool‐seq data allows distinction between general scenarios of ecotype formation (single versus parallel origin) and to infer relevant demographic parameters (e.g. effective sizes and split times). We exemplify the application of our method to Pool‐seq data ...
1、AID-seq可同时检测多条sgRNA的在靶和脱靶,用于sgRNA筛选 2、利用AID-seq快速获取新型CRISPR的脱靶数据,并建立脱靶预测模型 Pooled AID-seq应用场景 Pooled AID-seq优势 Pooled AID-seq送样要求 sgRNA是基因编辑安全性和有效性的关键影响因素之一,因此筛选切割效率高、脱靶效应低的sgRNA至关重要。但是目前sgRNA筛...
SeqPool Output Comparison Created 5 years agoDiff never expires 清除分享 15 removals 36 lines 全部複製 15 additions 36 lines 全部複製 No passes With passes Inputs: Inputs: -71486.53125000000000000 -71486.53125000000000000 1947.69616699218750000 1947.69616699218750000 -16652.85156250000000000 -16652.85156250000000000 ...
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vireo: donor deconvolution for pooled single-cell data Vireo: Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in multiplexed scRNA-seq data. The name vireo follows the theme from cardelino (for clone deconvolution), while the Python package name is vireoSNP to aviod name...
Processed data are available via the single-cell portal: https://singlecell.broadinstitute.org/single_cell/study/SCP1064/multi-modal-pooled-perturb-cite-seq-screens-in-patient-models-define-novel-mechanisms-of-cancer-immune-evasion. Raw data are available on the Broad Data Use and Oversight Syste...