function(slide){print(slide)sub.celltype<-subset(sce2,celltype==slide)sub.celltype<-NormalizeData(sub.celltype)sub.celltype<-FindVariableFeatures(sub.celltype)sub.celltype<-ScaleData(sub.celltype)sub.celltype<-RunPCA(sub.celltype,npcs=20)sub.celltype<-FindNeighbors(sub.celltype,dims...
function(slide){print(slide)sub.celltype<-subset(sce2,celltype==slide)sub.celltype<-NormalizeData(sub.celltype)sub.celltype<-FindVariableFeatures(sub.celltype)sub.celltype<-ScaleData(sub.celltype)sub.celltype<-RunPCA(sub.celltype,npcs= 20)sub.celltype<-FindNeighbors(sub.celltype...
二plot1cell 函数 1,绘制大群umap图 首先使用prepare_circlize_data函数得到绘图信息,然后plot_circlize函数可以直接绘制umap主图 并把单独的celltype圈画起来 。 ###Prepare data for ploting 准备圈图数据circ_data <- prepare_circlize_data(sce2, scale = 0.8 )set.seed(1234)# 设置细胞分群信息的颜色clu...
sub.celltype <- subset(sce2 , celltype == slide ) sub.celltype <- NormalizeData(sub.celltype) sub.celltype <- FindVariableFeatures(sub.celltype) sub.celltype <- ScaleData(sub.celltype ) sub.celltype <- RunPCA(sub.celltype,npcs = 20) sub.celltype <- FindNeighbors(sub.celltype,di...
首先使用prepare_circlize_data函数得到绘图信息,然后plot_circlize函数可以直接绘制umap主图 并把单独的celltype圈画起来 。 ###Prepare data for ploting 准备圈图数据circ_data <- prepare_circlize_data(sce2, scale =0.8)set.seed(1234)# 设置细胞分群信息的颜色cluster_colors<-rand_color(length(levels(sce...
cellplot(c) cellplot(c, 'legend') handles = cellplot(c) Description cellplot(c)displays a figure window that graphically represents the contents ofc. Filled rectangles represent elements of vectors and arrays, while scalars and short character vectors are displayed as text. ...
cell(data, options) js Plot.cell(simpsons, {x: "number_in_season", y: "season", fill: "imdb_rating"}) Returns a new cell with the given data and options. If neither the x nor y options are specified, data is assumed to be an array of pairs [[x₀, y₀], [x₁, ...
后来发现是Mapping the single-cell transcriptomic response of murine diabetic kidney disease to therapies这篇文章提到的R包plot1cell,链接是:https://github.com/HaojiaWu/plot1cell。plot1cell不仅可以进行炫酷的聚类图展示,也可以对单细胞数据的其他内容进行展示,例如气泡图,小提琴图,细胞比例图等等。这里我们只...
The cellplot function can display only two-dimensional cell arrays. Examples Consider a 2-by-2 cell array containing a matrix, a vector, and two character vectors: c{1,1} = '2-by-2'; c{1,2} = 'eigenvalues of eye(2)'; c{2,1} = eye(2); c{2,2} = eig(eye(2)); The co...
是的,complexheatmap 除了可以绘制热图,还可以绘制点图,强大不?去掉热图的方块(rect_gp = gpar(type = "none")),改为点(cell_fun),个人觉得这个想法很炫。 代码语言:javascript 代码运行次数:0 运行 AI代码解释 cell_fun=function(j,i,x,y,w,h,fill){grid.rect(x=x,y=y,width=w,height=h,gp=gpar...