Biological pathwayBiological pathway sBiological pathways Plant pathwayPlant pathway databasePlant pathway database sPlant pathway databases Molecular interactionMolecular interaction sMolecular interactions Metabolic Pathways Signaling pathwaySignaling pathway sSignaling pathways Regulatory pathwayRegulatory pathway sRegu...
pathway reconstructionreference databaseSummary This chapter contains sections titled: Introduction Pathway Representation Pathway Management Platforms Obtaining Pathway Information Constructing Organism-Specific Pathway Databases Conclusionsdoi:10.1002/9783527655984.ch05Hoffmann, Rémy D....
Metabolic pathway databases for plant research. MetaCyc (http://metacyc.org) contains experimentally determined biochemical pathways to be used as a reference database for metabolism. In conjunction with... Peifen Zhang, Hartmut Foerster, Christophe P. Tissier, Lukas Mueller, Suzanne Paley, Peter ...
KEGG is the major public database related to pathways [70] and it can identify the major biochemical metabolic pathways and signal transduction pathways for DEGs. According to the GO and pathway enrichment analysis results, q-value ≤0.05 was selected as the threshold of significance to determine...
Ernst J, Bar-Joseph Z: STEM: a tool for the analysis of short time series gene expression data. Bmc Bioinformatics. 2006, 7: Google Scholar Zhang PF, Foerster H, Tissier CP, Mueller L, Paley S, Karp PD, Rhee SY: MetaCyc and AraCyc. Metabolic pathway databases for plant research. ...
3A); the corresponding enriched metabolic pathways were plant–pathogen interaction, MAPK signaling pathway, spliceosome, mismatch repair, pentose phosphate pathway, homologous recombination, DNA replication, etc. (Fig. 3B). According to the pattern of gene expression changes during heat stress, the ...
cell cycle regulation, cellulose biosynthetic and metabolic activity, GTPase signal transduction, transcription regulation, meristem formation and maintenance, and/or apoptosis and microtubule organization. This review will help advance knowledge and promote research on molecular regulation of early somatic embr...
b Strategies for identification of an unknown enzyme in a pathway. Starting either with the native PNP-producing plant or a database of genes containing known or putative enzyme activity, a pool of potential genes can be identified and then cloned into a library of plasmids, which are then ...
Metabolic pathways of DAMs were also investigated using the KEGG database (KEGG PATHWAY Database (genome.jp)). Total RNA extraction and transcriptome sequencing Total RNA was extracted from 0.5 g fresh leaves using a Tiagen DP441 kit (Tiagen Biochemical Technology Co., LTD., Beijing, China),...
19 flavonoids ingredients and expression levels of genes encoding the 23 flavonoids biosynthesis enzymes;CA flavonoids biosynthesis pathway potentially used by the two Artemisia cultivars based on gene expression levels and pathway annotations in the Kyoto Encyclopedia of Genes and Genomes (KEGG)database ...