PCMDB(Plant Cell Marker Database)是郑州烟草研究院国家烟草基因研究中心曹培健团队开发建立。PCMDB基于三个数据来源(实验验证、普通转录组数据、单细胞转录组数据),挖掘了拟南芥、水稻、玉米、大豆、番茄、烟草等6个模式植物的81117个植物细胞标记基因,覆盖了22个组织的263种细胞类型。 04、PsctH 数据库链接:http:/...
PURPOSE:To improve the transformation efficiency of plant cell, by positioning a gene to a small-sized shuttle vector independent of T1 plasmid, thereby increasing the number of copies to several tens times. CONSTITUTION:A promoter which can be expressed in a plant cell is bonded functionally with...
PlantscRNAdb: A database for plant single-cell RNA analysis http://ibi.zju.edu.cn/plantscrnadb/index.php 浙江大学樊老师团队开发的PlantscRNAdb是一个植物单细胞RNA分析数据库,包括拟南芥、水稻、番茄茄、玉米、花椰菜、胡杨树、烟叶和lemuta等8种植物。支持在线查询植物单细胞数据集、marker gene等信息,可...
scPlantDB——探索植物细胞类型和标记基因的综合数据库 文章:He, Z., Luo, Y., Zhou, X., Zhu, T., Lan, Y., & Chen, D. (2024). scPlantDB: a comprehensive database for exploring cell types and markers of plant cell atlases. Nucleic Acids Research, 52(D1), D1629-D1638. https://...
4.marker gene 数据库 众所周知,单细胞数据的分群结果是建立在数学逻辑上的,缺乏生物学意义。在鉴定每个群的细胞类型时,我们依赖已有的细胞类型特异表达的marker基因。因此,准确的marker基因是确定细胞类型的关键。该网站提供了不同物种、不同组织的marker基因列表。这些marker基因经过了RNA原位杂交或GFP报告基因表达的验...
Naturally occurring variation among wild relatives of cultivated crops is an under-exploited resource in plant breeding. Here, I argue that exotic libraries, which consist of marker-defined genomic regions taken from wild species and introgressed onto th
The database search was constructed based on selected keywords; other related articles would have been found if there had been different associated keywords used. Moreover, non-English manuscripts were not considered in the analysis, such that potentially relevant papers published in other languages ...
In Arabidopsis, the final size of the seed is determined early on during its development by the growth of a single multinucleate cell, the coenocytic endosperm. The endosperm arises from a second fertilization event, alongside the embryo, and dominates the onset of seed development while later ...
PlantscRNAdb: A database for plant single-cell RNA analysis 数据库开发背景 (1)随着测序技术的发展,scRNA-seq已经被广泛用来研究植物基因表达组织异质性。scRNA-seq数据量快速增长,需要建立数据库和工具来容纳和分析这些数据。 (2)许多scRNA-seq数据库都是利用人类和模式动物的数据开发的。目前还没有针对多个植物...
A computational method called Ortho-Marker Gene Groups (OMGs) was developed to enable cell-type identification and comparison across plant single cell data. The OMG method revealed 14 conserved cell-type groups and is accessible via the OMG browser. ...