你有一个蛋白序列,想要得到他的功能区域注释,主要是三种方法。CDD,samrt,interpro. 1.cdd 直接去ncbi可以找到,但是不可以给你给出一个模式图。只有功能区的名字和信息 优点是可以批量处理 2.smart 不是很准。但是图好看 3.pfam(interpro) Pfam: Search Pfam (xfam.org) 以前是叫pfam。现在网站关了,并入了in...
Pfam domains and domain patterns in the microneme proteins of apicomplexan parasites.Zhongqiang ChenOmar S. HarbDavid S. Roos
omain search table. PFAM domain search table.PFAM domain search table.Kaneez, FatimaShilu, MathewMohd, SuhailAshraf, AliGhazi, DamanhouriEsam, AzharIshtiaq, Qadri
Pfam: A domain-centric method for analyzing proteins and proteomes The constant deluge of genome sequencing data means that annotating, classifying, and comparing proteins or proteomes can seam like an endless task. Furthe... J Mistry,R Finn - 《Methods in Molecular Biology》 被引量: 0发表:...
Significant DEI + DIR events found in the vicinity of a pFAM domain. EH Brian,H Qiwen,CB Ahmet,... 被引量: 0发表: 2013年 Intrinsic Structural Disorder Confers Cellular Viability on Oncogenic Fusion Proteins in disorder (43.3% vs. 20.7% in all human proteins), they have fewer Pfam ...
http://pfam./search#tabview=tab1 点击submit之后就等邮件就行了。运行完成,可以在邮箱里找到邮件,打开邮件 保存为文本文件 放到TBtools对应的工具中(Others->Domain/Motif Pattern Drawer->...Pfam...) 具体结果... 从这个结果来看,和NCBI CDD 的差别不是非常大, ...
concise/standard/full results该如何选择，选择full results出现的pfam号更多，不同的pfam号该如何选择，...
Pfam-A is curated and contains well-characterized protein domain families with high quality alignments, which are maintained by using manually checked seed alignments and HMMs to find and align all members. Pfam-B contains sequence families that were generated automatically by applying the Domainer ...
PROTEINS: Structure, Function, and Genetics 28:405–420 (1997) Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments Sonnhammer EL,Eddy SR,Durbin R.Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins . 1997Sonnhammer EL, Eddy...
PROTEINS: Structure, Function, and Genetics 28:405–420 (1997) Pfam: A Comprehensive Database of Protein Domain Families Based on Seed Alignments Sonnhammer EL,Eddy SR,Durbin R.Pfam: a comprehensive database of protein domain families based on seed alignments.Proteins. 1997Sonnhammer,E.L. et ...