The call to pdb.set_trace() is in fileutil.py in the function get_path(), so the current frame is initially set there. You can see it in the 1st line of output above: Shell > /code/fileutil.py(5)get_path() To access and print the local variable full_fname in the function...
Full size image Extensions to the PDBx/mmCIF framework PDBx/mmCIF framework organises information in categories containing related data items37. The updated PDBx/mmCIF files contain the residue mappings between UniProtKB and PDB, and annotations from Pfam, SCOP2, and CATH. The SIFTS annotations ar...
The wwPDB partners participate in supporting the full life cycle of the OneDep system. Software issues arising during system use are managed in a central JIRA tracking system (https://www.atlassian.com/software/jira), and all wwPDB partners participate in reporting, troubleshooting, and resolving...
Number of Chains: The number of distinct chains in the protein. Secondary Structure Composition: Number of helices, sheets, and coils. These newly added features enrich the dataset's potential for structural bioinformatics applications. For a full breakdown of the extraction process, refer to the ...