Regulatory network operations in the pathway tools software. BMC Bioinform. 2012; 3 :243. doi: 10.1186/1471-2105-13-243. [ Cross Ref ]Paley SM, Latendresse M, Karp PD. Regulatory network operations in the Pathway Tools software . BMC Bioinformatics . 2012; 13 : 243 doi: 10.1186/1471-...
All-new platform. Familiar frameworks and tools. Get ready to build and design an entirely new universe of apps for Apple Vision Pro.
Karp, P.D., Midford, P.E., Billington, R., Kothari, A., Krummenacker, M., Latendresse, M., Ong, W.K., Subhraveti, P., Caspi, R., Fulcher, C. and Keseler, I.M., 2021.Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology.Briefings in...
All-new platform. Familiar frameworks and tools. Get ready to build and design an entirely new universe of apps for Apple Vision Pro.
The experiment was programmed and presented using E-prime software (Psychology Software Tools, Pittsburg, PA). The total task duration was 585 s. Analysis of subjective ratings of distress, emotions, and speech performance We used non-parametric tests for examining speech-induced distress (...
The tools NEA and CrosstalkZ assess significance using statistical tests assuming that crosstalk between non-enriched gene sets is normally distributed, but this is often not the case. Moreover, they rely on network randomizations to obtain null model parameters, which makes them computationally very...
ChiBE is a Java application running on various platforms including Windows XP/Vista/7, Linux, and Mac OS X. It was built usingChisio 2.0andEclipse GEF 3.1for graph visualization,Paxtoolsfor accessing and manipulating BioPAX files, andPATIKAmadfor experiment data analysis. ...
Analytics go beyond pathway analysis to understand experimental results within the context of biological systems (Tables 1 and 2) and interactive tools allow detailed exploration of results, including comparisons across multiple analyses (Figure 1), discovery of novel biological connections, and generation...
Clinical pathways form one of these tools. A clinical pathway is ‘a complex intervention for the mutual decision making and organisation of care processes for a well-defined group of patients during a well-defined period’ [5]. It defines essential steps in the care plan that a patient with...
The development of computational tools and algorithms to study biological pathway networks has made great progress in helping analyze research data. Pathway databases become an integral part of such an approach. This chapter first discusses how biological knowledge is represented, particularly the ...