Ingenuity Pathway Analysis (IPA) Print 适用于'omics数据建模、分析和理解 基因表达/miRNA/SNP微阵列数据分析 更深入地理解代谢组学、蛋白质组学和RNAseq数据 上游调节因子鉴定 深入理解分子和化学相互作用以及细胞表型 疾病进程相关的发现 IPA是一款一体化的基于网络的软件应用程序,可实现基因表达、miRNA和...
Metabolic regulations was further examined using a metabolic pathway analysis software (MetPa), which confirmed the presence and activity of the alanine-GABA shunt in both leaves and roots (Fig. 1, grey box 5); however, the α-ketoglutarate shunt operated only in leaves during anoxic conditions ...
Furthermore, besides REACTOME, DAVID and ConsensusPathDB are also allowing users to access their analysis tools programmatically, through a set of web services. Hence, researchers and software developers can integrate the provided analysis tools into their pipelines and applications. However, while DAVID...
实际上,使用了GSVA,可以把成百上千个生物学功能注释(GO功能和KEGG通路)转换为新的表达矩阵,就是具体的每个通路在各个样本的基因集变异分析(Gene Set Variation Analysis,GSVA)值,我们把它当作一般的矩阵文件,进行差异表达分析,热图绘制,火山图绘制。 下面我们以文献 Metabolic remodeling contributes towards an immune...
Cell proliferation was monitored by analyzing the occupied area by cells over time, using the IncuCyte S3 Analysis software. N = 3 patient lines. Data presented as mean +/− SEM. Two-way ANOVA test was applied. P < 0.05 was designated as statistically significant. P = ...
The experiment was programmed and presented using E-prime software (Psychology Software Tools, Pittsburg, PA). The total task duration was 585 s. Analysis of subjective ratings of distress, emotions, and speech performance We used non-parametric tests for examining speech-induced distress (...
MetPA currently enables analysis and visualization of 874 metabolic pathways, covering 11 common model organisms. AVAILABILITY: Freely available at http://metpa.metabolomics.ca. 展开 关键词: Humans Internet Metabolic Networks and Pathways Metabolomics Neoplasms Software User-Computer Interface DOI: 10.1093/...
Paprica conducts metabolic inference on (preferably, but not exclusively, NGS) 16S rRNA gene libraries. Instead of using an OTU based approach however, it uses a phylogenetic placement approach. This provides a more intuitive connection between its “hidden state prediction” and library analysis comp...
Two algorithms which use summary statistics from GWAS as input were implemented in KGG, a novel and user-friendly software tool for GWAS pathway analysis. Comparisons of these two algorithms as well as the other five selected algorithms were conducted by analyzing the WTCCC Crohn's Disease dataset...