用bwa对一个自己构建的模拟数据进行比对的时候,发现bwa sampe过程中直接error跳出,报错:paired reads have different names。但是我去检查了一下报错的两条reads,这两个名字确实是一致的,并且在两fq文件中的位置一致。 网上搜了一些原因,发现了这个讨论:https://github.com/lh3/bwa/issues/228。感觉这个比较靠谱: ...
问题: 在用BWA进行序列比对时出现:[mem_sam_pe] paired reads have different names: "A00920:973:H5GWJDSX3:2:1103:2582:12633:UMI_AAT_GTA", "A00920:973:H5GWJDSX3:2:1103:1624:12633:UMI... 问题: 在用BWA进行序列比对时出现:[mem_sam_pe] paired reads have different names: "A00920:973:H5...
paired reads have different names: 002、解决方法,对fastq文件的read名进行重命名 脚本如下: ## step1:处理 read1awk'END{tmp = NR / 4; split(FILENAME, a, "_"); for (i = 1; i <= tmp; i++) {print "@"a[1]"."i,i"/1"}}'name_1.clean.fastq >name_1.list## 生成read名awk'...
方法一: 用以下命令修复: bbrename.sh in1=read1.fq in2=read2.fq out1=renamed1.fq out2=renamed2.fq bbrename.sh 下载地址网上自行搜索 对于多个fq文件,可以用以下命令: while read line do nohu
Hi, The simulated HiC paired reads have different names, whic show in the below picture. I hope you can help me to sovle this problem. Thanks a lot!
Hi, I encountered the issue about "paired reads have different names" in some of my sequencing data. The data are PE reads generated from MiSeq. The bwa commands I used were as follows: $ bwa index ref.fasta $ bwa mem ref.fasta read1.fas...
mapping生成sam文件时出现[mem_sam_pe] paired reads have different names错误 2017-06-20 18:20 −... 橙子牛奶糖 2 2714 【文件格式】解读sam格式文件 2019-12-24 16:34 −1,SAM文件格式介绍 SAM(The Sequence Alignment / Map format)格式,即序列比对文件的格式,详细介绍文档:http://samtools.github...
用bwa对一个自己构建的模拟数据进行比对的时候,发现bwa sampe过程中直接error跳出,报错:paired reads have different names。但是我去检查了一下报错的两条reads,这两个名字确实是一致的,并且在两fq文件中的位置一致。 网上搜了一些原因,发现了这个讨论:https://github.com/lh3/bwa/issues/228。感觉这个比较靠谱: ...
bwa双端数据比对错误:paired reads have different names原因及解决方法2021-07-19 大白说生信 首先是安装bbmap,bbmap中有这2个命令 https://anaconda.org/bioconda/bbmap 如下:详细的看网页 To install this package with conda run one of the following:...
This indicates that a given vTR can have different effects on human TFs, even within the same TF family. Distinct vTRs from a virus can also have different effects on the binding of a human TF. For example, Epstein-Barr virus proteins EBNA3B and EBNA3C cooperated with and antagonized RBPJ...