The CIBERSORTx web tool (https://cibersortx.stanford.edu/) [34] in conjunction with the covariate-adjusted gene expression levels was utilized to estimate the cellular proportions of the 12 types of cell states for each GLASS sample with batch correction of bulk model, disabling quantile ...
These reports include confidence intervals of the mean difference, the paired sample t-test, and non-parametric tests including the randomization test, the quantile (sign) test, and the Wilcoxon Signed-Rank test. Tests of assumptions and distribution plots are also available in this procedure. ...
first_qu = quantile(gain, 0.25), median = median(gain), mean = mean(gain), third_qu = quantile(gain, 0.75), max = max(gain), sd = sd(gain)) ## # A tibble: 2 × 8 ## hormone min first_qu median mean third_qu max sd ## ## 1 A 365 537.5 630.0 619.100 728.25 840 149.4...
LumA:n = 421 samples, LumB:n = 192 samples). The correlation coefficient andP-value were calculated with two-sided Pearson rank correlation. In the box plots, the center line corresponds to the median, box corresponds to
We found that target mRNAs that had the most negative correlations coefficients (lower 20th quantile) with the miRNA tended to be more downregulated in the transfection experiment than mRNAs with higher correlation coefficients (upper 20th quantile) (Fig. 2G). Thus, the transfection experiments are...
The constraint effect of one ecosystem service on the other was determined by extracting the upper constraint lines from the scatter plots of the paired ecosystem services with segmented quantile regression on the levels of landscape, class, and ecoregion. Our results revealed eight types of ...
After quantile normalization, we removed the probes with detecting p-values > 0.05 in all of the samples. The average of signal (AVG_signal) of each probe was calculated from duplication of expression data. Differentially expressed genes were identified as having a ≥1.25-fold change in ...
Consider the problem of designing a panel of complex biomarkers to predict a patient’s health or disease state when one can pair his or her current test sample, called a target sample, with the patient’s previously acquired healthy sample, called a reference sample. As contrasted to a popul...