The CIBERSORTx web tool (https://cibersortx.stanford.edu/) [34] in conjunction with the covariate-adjusted gene expression levels was utilized to estimate the cellular proportions of the 12 types of cell states for each GLASS sample with batch correction of bulk model, disabling quantile ...
These reports include confidence intervals of the mean difference, the paired sample t-test, and non-parametric tests including the randomization test, the quantile (sign) test, and the Wilcoxon Signed-Rank test. Tests of assumptions and distribution plots are also available in this procedure. ...
aUMAP embedding plot of 5992 myeloid cells grouped into 11 clusters.bA dot plot showing marker genes across myeloid clusters from the adjacent UMAP embedding plot (a). The dot size indicates the fraction of expressed cells, and the color represents the normalized expression level.cBar plots showi...
We found that target mRNAs that had the most negative correlations coefficients (lower 20th quantile) with the miRNA tended to be more downregulated in the transfection experiment than mRNAs with higher correlation coefficients (upper 20th quantile) (Fig. 2G). Thus, the transfection experiments are...
first_qu = quantile(gain, 0.25), median = median(gain), mean = mean(gain), third_qu = quantile(gain, 0.75), max = max(gain), sd = sd(gain)) ## # A tibble: 2 × 8 ## hormone min first_qu median mean third_qu max sd ## ## 1 A 365 537.5 630.0 619.100 728.25 840 149...
first_qu = quantile(gain, 0.25), median = median(gain), mean = mean(gain), third_qu = quantile(gain, 0.75), max = max(gain), sd = sd(gain)) ## # A tibble: 2 × 8 ## hormone min first_qu median mean third_qu max sd ...