FDR adjusted p-values associated with Spearman correlations between relative abundance (RA) of OTUs belonging to the major core microbiota and qPCR results.Cédric, BernardeMarlène, KeravecJérôme, MounierStéphanie, GouriouGilles, Ra...
and 2) the Storey pFDR 'q-value' procedure. In practice, however, the term 'q-value' has come to mean 'FDR-adjusted p-value', rather than specifically the Storey pFDR qvalue. The two methods will, however, yield identical results when ...
Function to calculate FDR adjusted p-valuesLukas Meier
So, I've been spending some time looking for a way to get adjusted p-values (aka corrected p-values, q-values, FDR) in Python, but I haven't really found anything. There's the R function p.adjust, but I would like to stick to Python coding, if possible. Is there anything similar...
the output column name to hold the adjusted p-values method method for adjusting p values (see p.adjust). Allowed values include "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none". If you don't want to adjust the p value (not recommended), use p.adjust.met...
Towards unbiased adjusted nonrandomized p-values A relevant question is: “Why choose um=1/2 or um=1 for each m in the computation of the nonrandomized p-values in Step 2b of the microarray analysis in Section 4.1?” For example, had we choose some ums near 0 and some ums near 1, ...
Are p values produced by `p.adjust(method="fdr")` actually probabilities? 3 FDR adjusted p-values and q-values Hot Network Questions Would Acid Fog dissolve the opponent's equipment? Horror film from the 60's that ends with the protagonist kissing a woman, who becomes a rotten corpse...
Given a set of p-values, returns p-values adjusted using one of several methods. Usage p.adjust(p, method = p.adjust.methods, n = length(p)) p.adjust.methods # c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", ...
data.pValue_adjusted = p.adjust(data.pValue, method='bonferroni') Is there a similiar function for Matlab? Ideally one that performs different adjustment methods (Bonferroni, Benjamini-Hochberg, FDR ...)? 'Sepal Length'), xlabel('Groups''Value''ctype',...
Notes on adjusted p-values and facet. When using the ggplot facet functions, the p-values are computed and adjusted by panel, without taking into account the other panels. This is by design in ggplot2. In this case, when there is only one computed p-value by panel, then using `label ...