Sample an approximate number of reads from a fastq file without reading the entire file - mdshw5/strandex
That was the last I saw or heard of the old man.【1】By saying it was indeed the case, the writer meant that .A.many shoppers would sample pudding before buying themB.the Christmas season was the time to promote pudding salesC.some people just sampled puddings but didn’t buy themD....
In addition, if the insertion is extremely longer than the insert size, the variant may not introduce the abnormal reads, while if the insertion is shorter than the insert size, the abnormal reads will be multiplied. Accordingly, the length of structural variant (L) should also be considered ...
For this, the average read depth for bins with GC content was calculated in intervals of 0.1% before using LOESS smoothing to fit a regression line to this data. The number of reads per bin was scaled using a correction value equal to the difference between the median read depth and the ...
SIFA applies only to WGS data because it assumes a Poisson distribution when modeling the total number of reads at a locus. BiTSC2 generalizes the SIFA model for single-cell data by accounting for the overlap of CNAs and SNVs, modeling allelic dropouts, missing data, and sequencing errors ...
Somatic copy number alterations (CNAs) are major mutations that contribute to the development and progression of various cancers. Despite a few computational methods proposed to detect CNAs from single-cell transcriptomic data, the technical sparsity of
The average number of reads in a region of a genome is dependent on the total number of reads sampled, the length of the genome and the length of the region. We use this relationship to compute a minimum sliding window size to achieve a desired minimum confidence level of the observations...
aIt is operated with lower labour intensity, but it cannot ensure the precision because of linearity error of the inductance sensor. Optical grating measuring inner diameter apparatus reads data of the inner diameter of gun barrel using a Optical grating sensor. The measuring data are sampled and ...
AN4230 Application note Introduction to random number generation validation using the NIST statistical test suite for STM32 MCUs and MPUs Introduction Many standards contain requirements and references for the extraction, validation, and use of random number generators (RNGs), to verify that their ...
In this work, we solve VNTR mapping for short reads with a repeat-pangenome graph (RPGG), a data structure that encodes both the population diversity and repeat structure of VNTR loci from multiple haplotype-resolved assemblies. We develop software to build a RPGG, and use the RPGG to ...