Noncoding SequencesNoncoding sequences do not specify an amino acid sequence or a tRNA or rRNA. About 98 to 99% of the human genome is noncoding. They are generally clustered (e.g., in human chromosome 5q31) in...doi:10.1007/978-1-4020-6754-9_11488George P. Rédei...
Conserved Noncoding Sequences (CNS)Proximal Promoter RegionJurkatCompetitive Oligonucleotide PrimingpGL3 ReporterSwiprosin-1 is expressed in various types of cells or tissues of different species. To investigate the mechanisms underlying Swiprosin-1 expression pattern, we analyzed the promoter activity of...
Noncoding nonconserved and nonrepetitive (any 100-bp fragment that hit the genome 50 times or more was masked; E ≤ 0.001) nucleotide sequences from the gene space of each CNS-containing gene were pooled and used as the control for the CNSs in that region of gene space. The gene space...
Conserved noncoding sequences conserve biological networks and influence genome evolutionDNA methylation plays important roles in responses to environmental stimuli. However, in perennial plants, the roles of DNA methylation in stress-specific adaptions to different abiotic stresses remain unclear. Here, ...
Institute of Molecular Genetics USSR Academy of SciencesJournal of Biomolecular Structure and DynamicsSprizhitski Yu A, Nechipurenko Yu D, Alexandrov AA, Volk- enstein MV (1988) Statistical analysis of nucleotide runs in coding and noncoding DNA sequences. J Biomol Struc Dyn 6:345-358...
Recent contributions from DNA sequences have revolutionized our concept of systematic relationships in angiosperms. However, parts of the angiosperm tree remain unclear. Previous studies have been based on coding or rDNA regions of relatively conserved genes. A phylogeny for basal angiosperms based on ...
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Capturing sequence variation among flowering-time regulatory gene homologs in the allopolyploid crop species Brassica napus Flowering, the transition from the vegetative to the generative phase, is a decisive time point in the lifecycle of a plant. Flowering is controlled by a c... S Schiessl,B ...
Kozomara, A.; Birgaoanu, M.; Griffiths-Jones, S. MiRBase: From microRNA sequences to function. Nucleic Acids Res. 2019, 47, D155–D162. [CrossRef] [PubMed] 15. Kim, Y.K.; Kim, V.N. Processing of intronic microRNAs. EMBO J. 2007, 26, 775–783. [CrossRef] 16. De Rie,...
At least 90,000 conserved noncoding sequences The PhyloP analyses yielded estimates of the number of individual sites under selection in specific portions of theA. thalianagenome, but they did not pinpoint the location of those sites. Constrained sites can only be reliably identified if they clust...