Proteins: Structure, Function, and Bioinformatics, 2018.Libbrecht MW, Bilmes JA, Noble WS. Choosing non-redundant representative subsets of protein sequence data sets using submodular optimization. Proteins: Structure, Function, and Bioinformatics 2018;86(4):454-466....
... 后血细胞大量聚集在一起形成结节(图 Fig 4.1 B 非冗 余蛋白质数据库( non-redundant protein databas…www.docin.com|基于2个网页 2. 蛋白质序列资料库 有8,867笔contigs可比对至NCBI 蛋白质序列资料库(non-redundant protein database)。利用MISA (MIcroSAtellite identification t…ir.lib.ncku.edu.tw|...
yielding 3,324 transcripts corresponding to 2,475 loci (Fig.1, Supplementary file: Text file containing identified lncRNAs sequences). We divided these lncRNA transcripts into seven types based on their genome locations (Table1). In total, 25.48% of lncRNAs are located in the intergenic...
filtering step of all sequences with homology to non-redundant proteins (nr) annotated in the NCBI database85,86using BLASTx82(evalue ≤ 1e−6, strand = “plus”). For each remaining transcript, we identified the best blast hit against the ‘nr’ database with a percentage of...
No protein grouping was allowed since the database only contained non-redundant entries. Peptides are considered detected with FDR q < 0.05 and Xcorr > 1.99. FDR is calculated by comparing Xcorr obtained from expected and observed MS/MS mass spectra with those obtained for a decoy database of...
- 《International Journal of Peptide & Protein Research》 被引量: 0发表: 1996年 Charge asymmetry in the proteins of the outer membrane. Of the non-redundant OMBB structures in the Protein Data Bank, half have been solved during the past 5 years. This influx of information provides new ......
We first removed the redundant predicted gene models (identity value ≥ 0.8) using CD-HIT [63]. Next, we aligned the protein sequences of the remaining predicted gene models to the pig reference genome using BLAST, and then labeled gene models aligned to reference genome as ‘reference-...
immunoglobulin production were reduced in CD100-deficient B cells. The humoral immune response against a T cell–dependent antigen and in vivo priming of T cells were also defective in the mutant mice. These results demonstrate nonredundant and essential roles of CD100-CD72 interactions in the ...
The RefSeq collection is unique in providing a curated, non-redundant, explicitly linked nucleotide and protein database representing significant taxonomic diversity. Genomic and protein sequence datasets are provided for the majority of organisms included; transcript records are currently provided for a su...
protein in some sub-fractions co-eluting with albumin (Supplementary Fig.S2a,b) which are well-known to ligate with albumin56,57. In healthy individuals, we can exclude the possibility that huge fragmentation and truncation produced low-molecular weight forms because the sequence coverages of the...