... 后血细胞大量聚集在一起形成结节(图 Fig 4.1 B 非冗 余蛋白质数据库( non-redundant protein databas…www.docin.com|基于2个网页 2. 蛋白质序列资料库 有8,867笔contigs可比对至NCBI 蛋白质序列资料库(non-redundant protein database)。利用MISA (MIcroSAtellite identification t…ir.lib.ncku.edu.tw|...
In addition, KEGG pathway analysis was conducted to determine the reaction networks of all identified DEPs using Blast2GO 4.0 against the non-redundant protein database (NR; NCBI) (http://www.geneontology.org/). Finally, protein-protein interactions were analyzed using the STRING v10 database ...
Of the non-redundant OMBB structures in the Protein Data Bank, half have been solved during the past 5 years. This influx of information provides new ... JSG Slusky,RLD Jr - 《Bioinformatics》 被引量: 28发表: 2013年 The divergence entropy characterizing the internal force field in proteins ...
filtering step of all sequences with homology to non-redundant proteins (nr) annotated in the NCBI database85,86using BLASTx82(evalue ≤ 1e−6, strand = “plus”). For each remaining transcript, we identified the best blast hit against the ‘nr’ database with a percentage of...
The contigs were compared to the NCBI non redundant protein database (NR, version January 20th 2013) using BLASTX, with a 1e-8 value threshold. BLAST2GO was used for the Gene Ontology (GO) annotation (GO association done by a BLAST against the NCBI NR database) [42]. Contigs were tr...
Domain sequence similarity searches were performed using PSI-BLAST program (Altschul et al., 1997) against the non-redundant (nr) database housed at the NCBI and the HHpred program (Zimmermann et al., 2018) against pfam and pdb databases (Finn et al., 2016, Burley et al., 2019). Struct...
The open reading frames (ORFs) of OR genes identified from the above-mentioned annotations were verified by BlastP searches against the non-redundant (nr) database at NCBI, transmembrane predictions (TMHMM2), and Pfam searches. To ensure that no OR sequences had been missed from this initial...
(BP), based on the blast hits from the NCBI non-redundant (nr)Viridiplantaeprotein database with an e-value cutoff of 1E-5. Across all GO annotations, ‘ATP binding’, ‘membrane’ and ‘protein phosphorylation’ were predominant in the MF, CC and BP categories, respectively. Since these...
M. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35, D61–D65 (2006). Google Scholar Mukherjee, S. et al. Genomes OnLine database (GOLD) v.7: updates and new features. Nucleic Acids Res. 47, D...
Protein kinase C (PKC) is considered to modulate glucose-stimulated insulin secretion. Pancreatic β cells express multiple isoforms of PKCs; however, the role of each isoform in glucose-stimulated insulin secretion remains controversial. In this study we investigated the role of PKCδ, a major ...