... 后血细胞大量聚集在一起形成结节(图 Fig 4.1 B 非冗 余蛋白质数据库( non-redundant protein databas…www.docin.com|基于2个网页 2. 蛋白质序列资料库 有8,867笔contigs可比对至NCBI 蛋白质序列资料库(non-redundant protein database)。利用MISA (MIcroSAtellite identification t…ir.lib.ncku.edu.tw|...
The conformations of protein loops from a non-redundant set of 347 proteins with less than 25% sequence homology have been studied in order to clarify the topological variation of protein loops. Loops have been classified in five types (α-α, α-β, β-α, β-links and β-hairpins) ...
Of the non-redundant OMBB structures in the Protein Data Bank, half have been solved during the past 5 years. This influx of information provides new ... JSG Slusky,RLD Jr - 《Bioinformatics》 被引量: 28发表: 2013年 The divergence entropy characterizing the internal force field in proteins ...
filtering step of all sequences with homology to non-redundant proteins (nr) annotated in the NCBI database85,86using BLASTx82(evalue ≤ 1e−6, strand = “plus”). For each remaining transcript, we identified the best blast hit against the ‘nr’ database with a percentage of...
No protein grouping was allowed since the database only contained non-redundant entries. Peptides are considered detected with FDR q < 0.05 and Xcorr > 1.99. FDR is calculated by comparing Xcorr obtained from expected and observed MS/MS mass spectra with those obtained for a decoy database of...
Clustering of highly homologous sequences to reduce the size of large protein databases It takes less than 2 h for the all-against-all sequence comparison and clustering of the non-redundant protein database of over 560000 sequences on a... W Li,L Jaroszewski,A Godzik - 《Bioinformatics》 ...
The RefSeq collection is unique in providing a curated, non-redundant, explicitly linked nucleotide and protein database representing significant taxonomic diversity. Genomic and protein sequence datasets are provided for the majority of organisms included; transcript records are currently provided for a su...
(e.g.23,24,25). For example, from pooled human CSF, we were able to identify 5185 non-redundant proteins supported by ≥1 peptides and 1691 by ≥2 peptides. We also applied our method to the search for biomarkers of severe inflammation or sepsis, renal failure, Alport syndrome17,26,...
Protein identification was carried out by combined PMF and MS/MS approach. Search was performed against non-redundant protein database at the NCBI. Of the 50 candidate spots analyzed by mass spectrometry only 36 proteins (72%) were successfully identified, which showed increase or decrease in ...
(BP), based on the blast hits from the NCBI non-redundant (nr)Viridiplantaeprotein database with an e-value cutoff of 1E-5. Across all GO annotations, ‘ATP binding’, ‘membrane’ and ‘protein phosphorylation’ were predominant in the MF, CC and BP categories, respectively. Since these...