$ perl $NGSQCHome/QC/IlluQC_PRLL.pl -pe r1.fq r2.fq 2 5 -p 8 -l 70 -s 20 IlluQC_PRLL.pl 和上一个程序没有多大区别,只是多了 ‘-c’ 参数来进行并行计算,增加程序速度。 454QC.pl 对454 reads进行QC。 454QC_PRLL.pl 和上一个程序一眼个,只是多了 ‘-c’ 参数来进行并行计算,增加...
NGS QC Toolkit: A toolkit for quality control of next generation sequencing data. PLoS One 2012;7:e30619.Patel RK, Jain M. NGS QC toolkit: a platform for quality control of next-generation sequencing data. In: Nelson Karen E, editors. Encyclo- pedia of Metagenomics. Boston, MA: Springer...
二代测序(next generation sequencing,NGS)技术是一种高通量方式产生大量的序列数据的技术。然而,序列数据的质量控制(quality control,QC)对于下游分析是极其重要的。 NGS QC工具包(NGS QC Toolkit),可以用于二代测序数据质量检查和高通量数据的过滤。它可以在http://www.nipgr.res.in/ngsqctoolkit.html中免费获得。
http://www.nipgr.res.in/ngsqctoolkit.html 它列出了它的几个功能模块,还给出了下载地址,还给出了说明文档,下载压缩包,解压即可使用啦 更重要的是给出了测试数据和测试的结果,而且还专门测试了不同测序平台及不同的测序策略的使用说明 里面就是一些perl测序,其实自己都可以写的,分成了四大类。 其中统计的那个...
Format converters;Illumina;NGS data quality control;NGS data trimming;Roche 454 Definition NGS QC Toolkit is a Perl-based stand-alone program package for the quality control (QC) of next-generation sequencing (NGS) data. In addition to QC tools, it consists of many subsidiary tools for handling...
ofdatasets.Here,wehavedevelopedanapplication,NGSQCToolkit,forqualitycheckandfilteringofhigh-qualitydata.This toolkitisastandaloneandopensourceapplicationfreelyavailableathttp://.nipgr.res.in/ngsqctoolkit.html.Allthe toolsintheapplicationhavebeenimplementedinPerlprogramminglanguage.Thetoolkitiscomprisedofuser-friendl...
NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www.nipgr.res.in/ngsqctoolkit.html) - mjain-lab/NGSQCToolkit
摘要: Format converters; Illumina; NGS data quality control; NGS data trimming; Roche 454 NGS QC Toolkit is a Perl-based stand-alone program package for the quality control (QC) of next-generation...关键词: DNA Primers Sequence Analysis Data Compression Statistics as Topic Polymerization High-...
NGSQC Toolkit 用于进行高通量测序数据的质量检查和数据过滤,具有去接头,去除非ATGC碱基,去除低质量碱基和reads等功能 1 安装 下载NGSQC Toolkit http://www.nipgr.res.in/ngsqctoolkit.html 在linux下解压缩,并给予执行权限 >unzip NGSQCToolkit_v2.3.3.zip ...
Comparison of various features of NGS QC toolkit and other available QC tools.Ravi, K. PatelMukesh, Jain