but also as self-contained full Nextclade datasets. Nextclade will take pathogen info, genome annotation, reference sequence, and, of course, reference tree from Auspice JSON. No other files are needed. This allows to use almost any Auspice dataset (e.g. fromnextstrain.org...
This definitively resolves crash due to missing JavaScript polyfills, which occurred in Nextclade Web 3.7.2Installation and usage 📚 Documentation: docs.nextstrain.org/projects/nextclade 🌍 Nextclade Web: clades.nextstrain.org 🖥️ Nextclade CLI: 📥 Standalone native executables can be downloaded...
🌍 Nextclade Web: clades.nextstrain.org 🖥️ Nextclade CLI: 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures. 🐋 Docker images are available on DockerHub 🐍 Conda package...
.github chore: remove failing Eslint github action Nov 5, 2020 3rdparty refactor: use local version of nlohman/json instead of conan package Mar 25, 2021 config/conan chore: remove unused emsdk via conan Jun 24, 2021 data data: update tree ...
Datasets for https://github.com/nextstrain/nextclade clades.nextstrain.org Resources Readme Code of conduct Code of conduct Activity Custom properties Stars 32 stars Watchers 12 watching Forks 27 forks Report repository Releases 86 2025-01-30--18-05-53Z Latest Jan 30, 2025 + 85...
Pull requests19 Discussions Actions Security Insights Additional navigation options Labels39Milestones0 LabelsMilestones New issue 111 Open353 Closed Author Label Projects Milestones Assignee Sort 👍👎😄🎉😕 ️🚀👀 Error message: Error: When reading a fasta record: Expected character '>' ...
git clone git@github.com:<your_github_username>/nextclade_data Add changes to your forked repository, commit and submit a pull request to the upstream repository nextstrain/nextclade_data. When submitting, tick the checkbox "Allow edits from maintainers", so that nextstrain-bot and project maintai...
segment]], genes = lambda w: GENES[w.segment], attribute_prefix_argument = get_titer_collection_attribute_prefix_argument, output:Footer © 2024 GitHub, Inc. Footer navigation Terms Privacy Security Status Docs Contact Manage cookies Do not share my personal information ...
Error message: TypeError: undefined is not iterable (cannot read property Symbol(Symbol.iterator)) Nextclade version 3.10.0 (commit: 59e757f, branch: master) Memory available: 3586 MBytes User agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Ch...
Actions Security Insights Compare nextstrain-botreleased this05 Jun 23:09 3.7.1 d7c4863 Nextclade 3.7.1 Warn if reference sequence does not match root sequence of the tree When both a standalone reference sequence and Auspice tree containing.root.sequence.nucare present, Nextclade will check that...